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zinc finger, CCCH-type with G patch domain

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GeneName zgpat
Aliases ENSDARG:ENSDARG00000027403; zgc:63730, MGC63730
Description zinc finger, CCCH-type with G patch domain
GenomicLocation chromosome 11 12918370-12930341 forward strand
ExternalIDs Entrez:393457; EMBL:BC055224; UniGene:8874; ZFIN:ZDB-GENE-040426-1248;
TranscriptID ENSDART:ENSDART00000037474; ENSDART:ENSDART00000129352; ENSDART:ENSDART00000130971
mRNA NCBI:NM_200485
GeneDescription Zgpat belongs to the Zinc finger, CCCH-type with G patch domain.
GeneFunction Strausberg et al. (2002) generated ESTs from libraries enriched for full-length cDNAs. They then analyzed it to identify candidate full-ORF clones, which then were sequenced to high accuracy.
GeneCloning Zgpat is contained in the BAC clone named DKEY-11M19 (Library: Daniokey; Vector: pIndigoBAC-536)
GeneStructure This gene encodes for 2 transcripts.

The transcript ENSDART00000037474 consists of 7 exons and is 1.828 bps in length. The protein product ENSDARP00000030077 consists of 504 residues.

The transcript ENSDART00000129352 consists of 7 exons and is 1.712 bps in length. The protein product ENSDARP00000109806 consists of 504 residues

Protein ENSDARP00000030077 ENSDARP00000109806 ENSDARP00000110929
ProteinDomainandFamilies has domain InterPro:IPR000571; InterPro:IPR000467;
Motifs has motif PFAM:PF00642; PFAM:PF01585;
Expression ArrayExpress:ENSDARG00000027403;
GeneOntology GO:0005622; GO:0008150; GO:0003676; GO:0008270;
Orthologs Entrez:84619;
VariationAndRepeats RSID:rs40781125; RSID:rs41043858; RSID:rs40845734; RSID:rs40875862; RSID:rs40919419; RSID:rs40855447; RSID:rs40753550; RSID:rs40690462;

RelatedPubMedArticles Strausberg, R.L.; Feingold, E.A.; Grouse, L.H.; Derge, J.G. Klausner, R.D.; Collins, F.S.; Wagner, L.; Shenmen, C.M.; Schuler,G.D.; Altschul, S.F.; Zeeberg, B.; Buetow, K.H.; Schaefer, C.F.; Bhat, N.K.; Hopkins, R.F.; Jordan, H.; Moore, T.; Max, S.I.; Wang, J.; Hsieh, F.; Diatchenko, L.; Marusina, K.; Farmer, A.A.; Rubin, G.M.; Hong, L.; Stapleton, M.; Soares, M.B.; Bonaldo, M.F.; Casavant, T.L.; Scheetz, T.E.; Brownstein, M.J.; Usdin, T.B.; Toshiyuki, S.; Carninci, P.; Prange, C.; Raha, S.S.; Loquellano, N.A.; Peters, G.J.; Abramson, R.D.; Mullahy, S.J.; Bosak, S.A.; McEwan, P.J.; McKernan, K.J.; Malek, J.A.; Gunaratne, P.H.; Richards, S.; Worley, K.C.; Hale, S.; Garcia, A.M.; Gay, L.J.; Hulyk, S.W.; Villalon, D.K.; Muzny, D.M.; Sodergren, E.J.; Lu, X.; Gibbs, R.A.; Fahey, J.; Helton, E.; Ketteman, M.; Madan, A.; Rodrigues, S.; Sanchez, A.; Whiting, M.; Madan, A.; Young, A.C.; Shevchenko, Y.; Bouffard, G.G.; Blakesley, R.W.; Touchman, J.W.; Green, E.D.; Dickson, M.C.; Rodriguez, A.C.; Grimwood, J.; Schmutz, J.; Myers, R.M.; Butterfield, Y.S.; Krzywinski, M.I.; Skalska, U.; Smailus, D.E.; Schnerch, A.; Schein, J.E.; Jones, S.J.; Marra, M.A.:
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. PMID:12477932 .
NCBI Resource Coordinators.: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 41(Database issue):D8-D20. 2013. PMID:23193264
Kersey, P. J.; Allen, J. E.; Christensen, M.; et al.: Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Res. 2013. PMID:24163254
Sigrist, C. J. A.; de, Castro, E; Cerutti, L; Cuche, B. A.; Hulo, N.; Bridge, A.; Bougueleret, L. Xenarios, I.: New and continuing developments at PROSITE. Nucleic Acids Res. doi: 10.1093/nar/gks1067. 2012. PMID:23161676
Punta, M.; Coggill, P. C.; Eberhardt, et al.: The Pfam protein families database. Nucleic Acids Res. 40(Database Issue):D290-D301. 2012. PMID:22127870
Hunter, S.; Jones P.; Mitchell A.; et al.: Interpro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. doi: 10.1093/nar/gkr948. 2011. PMID:22096229
Carbon, S.; Ireland, A.; Mungall, C. J.; Shu, S.; Marshall, B.; Lewis, S.; AMIGO Hub; Web Presence Working Group.: AMIGO: online access to ontology and annotation data. Bioinformatics. 25(2):288-9. 2009. PMID:19033274
Ashburner, M.; Ball, C. A.; Blake, J. A.; et al. The Gene Ontology Consortium.: Gene ontology: tool for the unification of biology. Nat. Genet. 25(1):25-9. 2000. PMID:10802651
Sherry, S. T.; Ward, M. H.; Kholodov, M.; Baker, J.; Phan, L.; Smigielski, E. M.; Sirotkin, K.: dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 1;29(1):308-11. 2001. PMID:11125122
Bradford, Y.; Conlin, T.; Dunn, N.; et al.: ZFIN: enhancements and updates to the zebrafish model organism database. Nucleic Acids Res. 39(suppl 1):D822-D829. 2011. PMID:21036866
Kapushesky, M.; Adamusiak, T.; Burdett, T.; et al.: Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Res. 40(Database isue):D1077-81. 2012. PMID:22064864

Web resources:
NCBI: http://www.ncbi.nlm.nih.gov/
PFAM: http://pfam.sanger.ac.uk/
PROSITE: http://prosite.expasy.org/
Interpro: http://www.ebi.ac.uk/interpro/
ZFIN: http://zfin.org/
Expression Atlas (EMBL): http://www.ebi.ac.uk/gxa/
Ensembl: http://asia.ensembl.org/Danio_rerio/
Database of Single Nucleotide Polymorphisms (dbSNP). Bethesda (MD): National Center for Biotechnology Information, National Library of Medicine.: http://www.ncbi.nlm.nih.gov/SNP/
PRINTS from Genomenet: http://www.genome.jp/
European Nucleotide Archive: http://www.ebi.ac.uk/ena/home
UNIGENE: http://www.ncbi.nlm.nih.gov/unigene/
AMIGO Gene Ontology: http://amigo.geneontology.org
Topic revision: r3 - 2011-12-19 - SubburajK
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