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Zbtb2b

zinc finger and BTB domain containing 2b

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GeneInformationForm
GeneName Zbtb2b
Aliases ENSDARG:ENSDARG00000028086; zbtb2; fc05d08; fc26d04; zgc:56572; wu:fc05d08; wu:fc26d04; CH73-109I14.4
Description zinc finger and BTB domain containing 2b
GenomicLocation chromosome 20 26423931-26436840 forward strand
ExternalIDs Entrez:406724; EMBL:BC049490; UniGene:1692; ZFIN:ZDB-GENE-040426-2753;
TranscriptID ENSDART:ENSDART00000078093; ENSDART:ENSDART00000036942; ENSDART:ENSDART00000128666
mRNA NCBI:NM_213415;
GeneDescription

GeneFunction Thisse et al. (2004), stated the gene expression pattern in detail. Until 10-13 somite stage there is no spatial expression of the gene. But at 14-19 somites stage there is basal level expression in ventral mesoderm. At 20-25 somites to Prim-5 there is basal level expression in eye, tectum and axial vasculature. This expression is maintained during Prim-15 to Prim-25 stages.
GeneCloning Zbtb2b is contained in BAC clone CH73-109I14 (Vector: pTARBAC2).
GeneStructure This gene encodes for 3 transcripts.The transcript ENSDART00000036942 consists of 3 exons and is 1.715 bps in length. The protein product ENSDARP00000028479 consists of 538 residues.The transcript ENSDART00000078093 consists of 3 exons and is 3.863 bps in length. The protein product ENSDARP00000072556 consists of 538 residues.The transcript ENSDART00000128666 consists of 4 exons and is 2.836 bps in length. The protein product ENSDARP00000105668 consists of 215 residues
Protein ENSDARP00000072556 ENSDARP00000028479 ENSDARP00000105668
ProteinDomainandFamilies has domain InterPro:IPR000210; InterPro:IPR013069; InterPro:IPR011333; InterPro:IPR015880; InterPro:IPR007087; InterPro:IPR013087;
Motifs has motif Prosite:PS00028; Prosite:PS50097; Prosite:PS50157; PFAM:PF00096; PFAM:PF00651;
Expression ArrayExpress:ENSDARG00000028086
GeneOntology GO:0046872; GO:0003676; GO:0005515; GO:0008270; GO:0005622;
Orthologs Entrez:57621;
VariationAndRepeats RSID:rs179657710; RSID:rs179908157; RSID:rs179908236; RSID:rs179908236; RSID:rs179908236; RSID:rs179908156; RSID:rs179908156; RSID:rs179908156; RSID:rs179908204; RSID:rs179908204; RSID:rs179908204; RSID:rs179657690; RSID:rs179657690; RSID:rs179657690; RSID:rs179657744; RSID:rs179657744; RSID:rs179657744; RSID:rs179657704; RSID:rs179657704; RSID:rs179657704; RSID:rs179657737; RSID:rs179657737; RSID:rs179657737; RSID:rs179657726; RSID:rs179657726; RSID:rs179657726; RSID:rs179657784; RSID:rs179657784; RSID:rs179657784; RSID:rs179657705; RSID:rs179657705; RSID:rs179657705; RSID:rs179657769; RSID:rs179657769; RSID:rs179657769; RSID:rs179657754; RSID:rs179657754; RSID:rs179657754; RSID:rs179657770; RSID:rs179657770; RSID:rs179657770; RSID:rs179657697; RSID:rs179657697; RSID:rs179657697; RSID:rs179657775; RSID:rs179657775; RSID:rs179657775; RSID:rs179657759; RSID:rs179657759; RSID:rs179657759; RSID:rs179657750; RSID:rs179657750; RSID:rs179657750; RSID:rs179657730; RSID:rs179657730; RSID:rs179657730; RSID:rs179657785; RSID:rs179657785; RSID:rs179657785; RSID:rs179657716; RSID:rs179657716; RSID:rs179657716; RSID:rs179657768; RSID:rs179657768; RSID:rs179657768; RSID:rs179657774; RSID:rs179657774; RSID:rs179657774; RSID:rs179657779; RSID:rs179657779; RSID:rs179657779; RSID:rs179657695; RSID:rs179657695; RSID:rs179657695; RSID:rs179908286; RSID:rs179908286; RSID:rs179908286; RSID:rs179657742; RSID:rs179657742; RSID:rs179657742; RSID:rs179657740; RSID:rs179657740; RSID:rs179657740; RSID:rs179657731; RSID:rs179657731; RSID:rs179657731; RSID:rs179657777; RSID:rs179657777; RSID:rs179657777; RSID:rs179657773; RSID:rs179657773; RSID:rs179657773; RSID:rs179657691; RSID:rs179657691; RSID:rs179657691; RSID:rs179657717; RSID:rs179657717; RSID:rs179657717; RSID:rs179657706; RSID:rs179657706; RSID:rs179657706; RSID:rs179657746; RSID:rs179657746; RSID:rs179657746; RSID:rs179657753; RSID:rs179657753; RSID:rs179657753; RSID:rs179657724; RSID:rs179657724; RSID:rs179657724; RSID:rs179657771; RSID:rs179657771; RSID:rs179657771; RSID:rs179657752; RSID:rs179657752; RSID:rs179657752; RSID:rs179657692; RSID:rs179657692; RSID:rs179657692; RSID:rs179657745; RSID:rs179657745; RSID:rs179657745; RSID:rs179657709; RSID:rs179657709; RSID:rs179657709; RSID:rs179657772; RSID:rs179657772; RSID:rs179657772; RSID:rs179908302; RSID:rs179908302; RSID:rs179908302; RSID:rs179657755; RSID:rs179657755; RSID:rs179657755; RSID:rs179657765; RSID:rs179657765; RSID:rs179657765; RSID:rs179657728; RSID:rs179657728; RSID:rs179657728; RSID:rs179908217; RSID:rs179908217; RSID:rs179908217; RSID:rs179908152; RSID:rs179908152; RSID:rs179908152; RSID:rs179657781; RSID:rs179657781; RSID:rs179657781; RSID:rs179657735; RSID:rs179657735; RSID:rs179657735; RSID:rs179657760; RSID:rs179657760; RSID:rs179657760; RSID:rs179657788; RSID:rs179657788; RSID:rs179657788; RSID:rs179657780; RSID:rs179657780; RSID:rs179657780; RSID:rs179657700; RSID:rs179657700; RSID:rs179657700; RSID:rs179657715; RSID:rs179657715; RSID:rs179657715; RSID:rs179657693; RSID:rs179657693; RSID:rs179657693; RSID:rs179657707; RSID:rs179657707; RSID:rs179657707; RSID:rs179657751; RSID:rs179657751; RSID:rs179657751; RSID:rs179657786; RSID:rs179657786; RSID:rs179657786; RSID:rs179657725; RSID:rs179657725; RSID:rs179657725; RSID:rs179657687; RSID:rs179657687; RSID:rs179657687; RSID:rs179657783; RSID:rs179657783; RSID:rs179657783; RSID:rs179657749; RSID:rs179657749; RSID:rs179657749; RSID:rs179657698; RSID:rs179657698; RSID:rs179657698; RSID:rs179657738; RSID:rs179657738; RSID:rs179657738; RSID:rs179657694; RSID:rs179657694; RSID:rs179657694; RSID:rs179908191; RSID:rs179908191; RSID:rs179908191; RSID:rs179657766; RSID:rs179657766; RSID:rs179657766; RSID:rs41247656; RSID:rs41247656; RSID:rs41247656; RSID:rs40721511; RSID:rs40721511; RSID:rs40721511; RSID:rs179657712; RSID:rs179657712; RSID:rs179657712; RSID:rs179657733; RSID:rs179657733; RSID:rs179657733; RSID:rs179657720; RSID:rs179657720; RSID:rs179657720; RSID:rs41196038; RSID:rs41196038; RSID:rs41196038; RSID:rs40932280; RSID:rs40932280; RSID:rs40932280; RSID:rs179657782; RSID:rs179657782; RSID:rs179657782; RSID:rs179657762; RSID:rs179657762; RSID:rs179657762; RSID:rs40962144; RSID:rs40962144; RSID:rs40962144; RSID:rs179657758; RSID:rs179657758; RSID:rs179657758; RSID:rs179908187; RSID:rs179908187; RSID:rs179908187; RSID:rs179908244; RSID:rs179908244; RSID:rs179908244; RSID:rs179908220; RSID:rs179908220; RSID:rs179908220; RSID:rs179657689; RSID:rs179657689; RSID:rs179657689; RSID:rs41238639; RSID:rs41238639; RSID:rs41238639; RSID:rs179657748; RSID:rs179657748; RSID:rs179657748; RSID:rs179657763; RSID:rs179657763; RSID:rs179657763; RSID:rs179657696; RSID:rs179657696; RSID:rs179657696; RSID:rs179657743; RSID:rs179657743; RSID:rs179657743; RSID:rs179657713; RSID:rs179657713; RSID:rs179657713; RSID:rs179657721; RSID:rs179657721; RSID:rs179657721; RSID:rs179657702; RSID:rs179657702; RSID:rs179657702; RSID:rs179657778; RSID:rs179657778; RSID:rs179657778; RSID:rs179657789; RSID:rs179657789; RSID:rs179657789; RSID:rs179657767; RSID:rs179657767; RSID:rs179411738; RSID:rs179411738; RSID:rs179411800; RSID:rs179411800; RSID:rs179411719; RSID:rs179411719; RSID:rs179411781; RSID:rs179411781; RSID:rs179908194; RSID:rs179908194; RSID:rs179411792; RSID:rs179411792; RSID:rs179411593; RSID:rs179411593; RSID:rs179411599; RSID:rs179411599; RSID:rs179411531; RSID:rs179411531; RSID:rs179411605; RSID:rs179411605; RSID:rs179411600; RSID:rs179411600; RSID:rs179411589; RSID:rs179411589; RSID:rs179411809; RSID:rs179411809; RSID:rs179411596; RSID:rs179411596; RSID:rs179411539; RSID:rs179411539
DisordersAndMutations

RelatedPubMedArticles Thisse, B., Thisse, C. (2004);Fast Release Clones: A High Throughput Expression Analysis. ZFIN Direct Data Submission NCBI Resource Coordinators.: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 41(Database issue):D8-D20. 2013. PMID:23193264
Kersey, P. J.; Allen, J. E.; Christensen, M.; et al.: Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Res. 2013. PMID:24163254
Sigrist, C. J. A.; de, Castro, E; Cerutti, L; Cuche, B. A.; Hulo, N.; Bridge, A.; Bougueleret, L. Xenarios, I.: New and continuing developments at PROSITE. Nucleic Acids Res. doi: 10.1093/nar/gks1067. 2012. PMID:23161676
Punta, M.; Coggill, P. C.; Eberhardt, et al.: The Pfam protein families database. Nucleic Acids Res. 40(Database Issue):D290-D301. 2012. PMID:22127870
Hunter, S.; Jones P.; Mitchell A.; et al.: Interpro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. doi: 10.1093/nar/gkr948. 2011. PMID:22096229
Carbon, S.; Ireland, A.; Mungall, C. J.; Shu, S.; Marshall, B.; Lewis, S.; AMIGO Hub; Web Presence Working Group.: AMIGO: online access to ontology and annotation data. Bioinformatics. 25(2):288-9. 2009. PMID:19033274
Ashburner, M.; Ball, C. A.; Blake, J. A.; et al. The Gene Ontology Consortium.: Gene ontology: tool for the unification of biology. Nat. Genet. 25(1):25-9. 2000. PMID:10802651
Sherry, S. T.; Ward, M. H.; Kholodov, M.; Baker, J.; Phan, L.; Smigielski, E. M.; Sirotkin, K.: dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 1;29(1):308-11. 2001. PMID:11125122
Bradford, Y.; Conlin, T.; Dunn, N.; et al.: ZFIN: enhancements and updates to the zebrafish model organism database. Nucleic Acids Res. 39(suppl 1):D822-D829. 2011. PMID:21036866
Kapushesky, M.; Adamusiak, T.; Burdett, T.; et al.: Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Res. 40(Database isue):D1077-81. 2012. PMID:22064864

Web resources:
NCBI: http://www.ncbi.nlm.nih.gov/
PFAM: http://pfam.sanger.ac.uk/
PROSITE: http://prosite.expasy.org/
Interpro: http://www.ebi.ac.uk/interpro/
ZFIN: http://zfin.org/
Expression Atlas (EMBL): http://www.ebi.ac.uk/gxa/
Ensembl: http://asia.ensembl.org/Danio_rerio/
Database of Single Nucleotide Polymorphisms (dbSNP). Bethesda (MD): National Center for Biotechnology Information, National Library of Medicine.: http://www.ncbi.nlm.nih.gov/SNP/
PRINTS from Genomenet: http://www.genome.jp/
European Nucleotide Archive: http://www.ebi.ac.uk/ena/home
UNIGENE: http://www.ncbi.nlm.nih.gov/unigene/
AMIGO Gene Ontology: http://amigo.geneontology.org
Topic revision: r2 - 2013-07-06 - AravindR
 
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