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SRY-box containing gene 4b;

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GeneName sox4b
Aliases ENSDARG:ENSDARG00000043235; MGC63851; zgc:63851; sox4b
Description SRY-box containing gene 4b;
GenomicLocation chromosome 16 20986-22432 forward strand
ExternalIDs Entrez:393875; EMBL:AY369082; UniGene:29160; ZFIN:ZDB-GENE-040426-1274;
TranscriptID ENSDART:ENSDART00000063476
mRNA NCBI:NM_200901
GeneDescription This intronless gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate.
GeneFunction Mavropoulos et al. (2005) reported that sox4b gene is required for proper endocrine cell differentiation .Sox4b is strongly expressed in pancreatic analage.The transcripts of sox4b were detected as early as 5 somite stage in the mid trunk endodermal region which is the prospective pancreatic region.At 12 somite stage the sox4b expressing cells are arranged in a one cell thick V- shaped domain and this expression persists till 24 hpf in this region.It was found that sox4b plays a crucial role in glacagon development. To confirm that two MOs were developed by injecting antisense oligonucleotides and it was found that these sox knockdowns showed a drastic decrease in glucagon expressing cells.
GeneCloning NO data available
GeneStructure This gene encodes for single transcript (ENSDART00000063476) which consists of single exon and is 1447 bps in length. The protein product (ENSDARP00000063475) consists of 342 residues.
Protein ENSDARP00000063475
ProteinDomainandFamilies InterPro:IPR009071; [InterPro:IPR017386]];
Motifs has motif Prosite:PS50118; PFAM:PF00505;
Expression ArrayExpress:ENSDARG00000043235;
GeneOntology GO:0003677; GO:0031018; GO:0005634;
Orthologs Entrez:6659;
VariationAndRepeats RSID:rs40743093; RSID:rs40687643; RSID:rs40607846; RSID:rs41187873; RSID:rs180097939

RelatedPubMedArticles Mavropoulos, A.; Devos, N.; Biemar, F.; Zecchin, E.; Argenton, F.; Edlund, H.; Motte, P.; Martial, J.A.; Peers, B.: sox4b is a key player of pancreatic alpha cell differentiation in zebrafish. Dev Biol. 1;285(1):211-23, 2005. PMID:16055112 NCBI Resource Coordinators.: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 41(Database issue):D8-D20. 2013. PMID:23193264
Kersey, P. J.; Allen, J. E.; Christensen, M.; et al.: Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Res. 2013. PMID:24163254
Sigrist, C. J. A.; de, Castro, E; Cerutti, L; Cuche, B. A.; Hulo, N.; Bridge, A.; Bougueleret, L. Xenarios, I.: New and continuing developments at PROSITE. Nucleic Acids Res. doi: 10.1093/nar/gks1067. 2012. PMID:23161676
Punta, M.; Coggill, P. C.; Eberhardt, et al.: The Pfam protein families database. Nucleic Acids Res. 40(Database Issue):D290-D301. 2012. PMID:22127870
Hunter, S.; Jones P.; Mitchell A.; et al.: Interpro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. doi: 10.1093/nar/gkr948. 2011. PMID:22096229
Carbon, S.; Ireland, A.; Mungall, C. J.; Shu, S.; Marshall, B.; Lewis, S.; AMIGO Hub; Web Presence Working Group.: AMIGO: online access to ontology and annotation data. Bioinformatics. 25(2):288-9. 2009. PMID:19033274
Ashburner, M.; Ball, C. A.; Blake, J. A.; et al. The Gene Ontology Consortium.: Gene ontology: tool for the unification of biology. Nat. Genet. 25(1):25-9. 2000. PMID:10802651
Sherry, S. T.; Ward, M. H.; Kholodov, M.; Baker, J.; Phan, L.; Smigielski, E. M.; Sirotkin, K.: dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 1;29(1):308-11. 2001. PMID:11125122
Bradford, Y.; Conlin, T.; Dunn, N.; et al.: ZFIN: enhancements and updates to the zebrafish model organism database. Nucleic Acids Res. 39(suppl 1):D822-D829. 2011. PMID:21036866
Kapushesky, M.; Adamusiak, T.; Burdett, T.; et al.: Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Res. 40(Database isue):D1077-81. 2012. PMID:22064864

Web resources:
NCBI: http://www.ncbi.nlm.nih.gov/
PFAM: http://pfam.sanger.ac.uk/
PROSITE: http://prosite.expasy.org/
Interpro: http://www.ebi.ac.uk/interpro/
ZFIN: http://zfin.org/
Expression Atlas (EMBL): http://www.ebi.ac.uk/gxa/
Ensembl: http://asia.ensembl.org/Danio_rerio/
Database of Single Nucleotide Polymorphisms (dbSNP). Bethesda (MD): National Center for Biotechnology Information, National Library of Medicine.: http://www.ncbi.nlm.nih.gov/SNP/
PRINTS from Genomenet: http://www.genome.jp/
European Nucleotide Archive: http://www.ebi.ac.uk/ena/home
UNIGENE: http://www.ncbi.nlm.nih.gov/unigene/
AMIGO Gene Ontology: http://amigo.geneontology.org
Topic revision: r4 - 2013-08-22 - SubburajK
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