Tags:
create new tag
, view all tags

pgm3

phosphoglucomutase 3

Rate Information on this Page
Score: 0, My vote: 0, Total votes: 0

GeneInformationForm
GeneName pgm3
Aliases ENSDARG:ENSDARG00000024654; fc08c11, wu:fc08c11, zgc:91932
Description phosphoglucomutase 3
GenomicLocation chromosome 4 5658219-5668558 reverse strand
ExternalIDs Entrez:474321; EMBL:BC084691; UniGene:37649; ZFIN:ZDB-GENE-041024-13;
TranscriptID ENSDART:ENSDART00000039987
mRNA NCBI:NM_001007053
GeneDescription Phosphoglucomutase 3 is a gene which mainly functions in glycolysis and gluconeogenesis by catalyzing the transfer of phosphate between the 1- and 6- position of glucose. It has been suspected that pgm3 may have other functions in metabolism which are so far unrecognized, a view supported by the finding that PGM2 shows a remarkable phosphopentomutase activity unique to this isoform.
GeneFunction Thisse et al. (2004), studied the expression pattern of pgm3 in various developmental stages of zebrafish embryo. The first sight of expression starts at 20-25 somite stage to prim-5 stages where pgm3 is expressed at intermediate cell mass of mesoderm. At prim-15 to prim-25 stage the expression is seen in the blood.
GeneCloning

GeneStructure Pgm3 encodes for a single transcript ENSDART00000039987 which consists of 13 exons and is 2,731 bps in length. The protein product ENSDARP00000039986 consists of 545 residues.
Protein ENSDARP00000039986
ProteinDomainandFamilies has domain InterPro:IPR005843; InterPro:IPR016055; InterPro:IPR005844; InterPro:IPR016066; InterPro:IPR005845; InterPro:IPR016657;
Motifs has motif Prosite:PS00710; PFAM:PF00408; PFAM:PF02878; PFAM:PF02879;
Expression ArrayExpress:ENSDARG00000024654;
GeneOntology GO:0005575; GO:0005975; GO:0016868;
Orthologs Entrez:5238
VariationAndRepeats

DisordersAndMutations ZFIN ID: ZDB-ALT-130411-2833
RelatedPubMedArticles Thisse, B., Thisse, C.. (2004), Fast Release Clones: A High Throughput Expression Analysis , ZFIN Direct Data Submission.Wendy PUTT, Jane H. IVES, Martine HOLLYOAKE, David A. HOPKINSON, David B. WHITEHOUSE and Yvonne H. EDWARDS , (1993) , Phosphoglucomutase 1: a gene with two promoters and a duplicated first exon ,; Biochem. J. 296, 417-422 NCBI Resource Coordinators.: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 41(Database issue):D8-D20. 2013. PMID:23193264
Kersey, P. J.; Allen, J. E.; Christensen, M.; et al.: Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Res. 2013. PMID:24163254
Sigrist, C. J. A.; de, Castro, E; Cerutti, L; Cuche, B. A.; Hulo, N.; Bridge, A.; Bougueleret, L. Xenarios, I.: New and continuing developments at PROSITE. Nucleic Acids Res. doi: 10.1093/nar/gks1067. 2012. PMID:23161676
Punta, M.; Coggill, P. C.; Eberhardt, et al.: The Pfam protein families database. Nucleic Acids Res. 40(Database Issue):D290-D301. 2012. PMID:22127870
Hunter, S.; Jones P.; Mitchell A.; et al.: Interpro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. doi: 10.1093/nar/gkr948. 2011. PMID:22096229
Carbon, S.; Ireland, A.; Mungall, C. J.; Shu, S.; Marshall, B.; Lewis, S.; AMIGO Hub; Web Presence Working Group.: AMIGO: online access to ontology and annotation data. Bioinformatics. 25(2):288-9. 2009. PMID:19033274
Ashburner, M.; Ball, C. A.; Blake, J. A.; et al. The Gene Ontology Consortium.: Gene ontology: tool for the unification of biology. Nat. Genet. 25(1):25-9. 2000. PMID:10802651
Sherry, S. T.; Ward, M. H.; Kholodov, M.; Baker, J.; Phan, L.; Smigielski, E. M.; Sirotkin, K.: dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 1;29(1):308-11. 2001. PMID:11125122
Bradford, Y.; Conlin, T.; Dunn, N.; et al.: ZFIN: enhancements and updates to the zebrafish model organism database. Nucleic Acids Res. 39(suppl 1):D822-D829. 2011. PMID:21036866
Kapushesky, M.; Adamusiak, T.; Burdett, T.; et al.: Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Res. 40(Database isue):D1077-81. 2012. PMID:22064864

Web resources:
NCBI: http://www.ncbi.nlm.nih.gov/
PFAM: http://pfam.sanger.ac.uk/
PROSITE: http://prosite.expasy.org/
Interpro: http://www.ebi.ac.uk/interpro/
ZFIN: http://zfin.org/
Expression Atlas (EMBL): http://www.ebi.ac.uk/gxa/
Ensembl: http://asia.ensembl.org/Danio_rerio/
Database of Single Nucleotide Polymorphisms (dbSNP). Bethesda (MD): National Center for Biotechnology Information, National Library of Medicine.: http://www.ncbi.nlm.nih.gov/SNP/
PRINTS from Genomenet: http://www.genome.jp/
European Nucleotide Archive: http://www.ebi.ac.uk/ena/home
UNIGENE: http://www.ncbi.nlm.nih.gov/unigene/
AMIGO Gene Ontology: http://amigo.geneontology.org
Topic revision: r2 - 2013-08-15 - RamcharanAngom
 
This site is powered by the TWiki collaboration platform Powered by PerlCopyright © 2008-2017 by the contributing authors. All material on this collaboration platform is the property of the contributing authors.
Ideas, requests, problems regarding TWiki? Send feedback

mersin escort bayan adana escort bayan izmit escort ankara escort bursa escort