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heat shock protein, alpha-crystallin-related, b8


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GeneName Hspb8
Aliases ENSDARG:ENSDARG00000058365; fc09c11; MGC64202; zgc:64202; wu:fc04b04; wu:fc09c11
Description heat shock protein, alpha-crystallin-related, b8
GenomicLocation chromosome 5 17593474-17614308 forward strand
ExternalIDs ZFIN:ZDB-GENE-030131-2480; Entrez:791580; UniGene:75250
TranscriptID ENSDART:ENSDART00000081230; ENSDART:ENSDART00000134206
mRNA NCBI:NM_001100957
GeneDescription Hspb8 is a member of heat shock protein family with their relative abundance in the broad spectrum of embryonic and adult libraries.
GeneFunction Elicker et al. (2007) reported the identification of 13 zebrafish sHSPs. Of these, 6 new Zebrafish sHSPs, were found to be orthologous to the tetrapod genes hspb7 and hspb8. Analysis of synteny between Zebrafish and human genomes are relatively well conserved, with less strong conservation for hspb8, hspb3, hspb4 and hspb5a. upon one-hour heat shock at 37C, the expression of several sHSPs, including hspb8 were found to be upregulated more than 5-fold at one or more stages of development.Marvin et al. (2008) characterized the expression pattern of 13 zebrafish sHSPs. At 10 somites, hspb8 was expressed in the notochord and in a patch in the ventral portion of the midbrain-hindbrain boundary. At 24 hpf, hspb8 was no longer expressed in the midbrain-hindbrain boundary and its expression was restricted to the somites and the yolk synctial layer in the yolk extension, and it was expressed low levels in the notochord.At 48 hpf, hspb8 continued to be expressed in the somites, and was then found to be expressed in the specific structures in the head. Hspb8 was upregulated by heat shock in all of its normal expression domains and was also upregulated strongly in the epiphysis, heart, ventral hindbrain, and somites.
GeneCloning Hspb8 is contained in the BAC clone named DKEY-1K23 (library: Daniokey; Vector: pIndigoBAC-536).
GeneStructure This gene encodes for 2 transcripts .Transcript ENSDART00000081230 which consists of 3 exons with the transcript length of 595 bps. The protein product ENSDARP00000075673 consists of 145 residues.Transcript ENSDART00000134206 which consists of 3 exons with the transcript length of 4491 bps. The protein product ENSDARP00000113545 consists of 216 residues.
Protein ENSDARP00000075673 ENSDARP00000113545
ProteinDomainandFamilies has domain InterPro:IPR001436; InterPro:IPR002068; InterPro:IPR008978
Motifs has motif Prosite:PS01031; PFAM:PF00011
Expression ArrayExpress:ENSDARG00000058365;
GeneOntology GO:0003674; GO:0009408; GO:0005575
Orthologs Entrez:26353;
VariationAndRepeats RSID:rs180162269; RSID:rs40835314; RSID:rs180118304; RSID:rs41117456; RSID:rs40797679; RSID:rs41238216; RSID:rs41142494; RSID:rs40593986; RSID:rs40713014; RSID:rs41226954; RSID:rs41197983; RSID:rs41016860; RSID:rs41012939; RSID:rs41240345; RSID:rs41021473; RSID:rs40981781; RSID:rs41138038; RSID:rs40777352; RSID:rs40599445; RSID:rs41026008; RSID:rs40823004; RSID:rs40939776; RSID:rs41183177; RSID:rs41123741; RSID:rs41017801; RSID:rs40710501; RSID:rs40724553; RSID:rs41228626; RSID:rs41021219; RSID:rs41155576; RSID:rs40647144; RSID:rs40657786; RSID:rs40900573; RSID:rs180162267; RSID:rs40723388; RSID:rs40977178; RSID:rs40829083; RSID:rs180162266; RSID:rs40996009; RSID:rs40696629; RSID:rs40769212; RSID:rs40911168; RSID:rs180162265;

RelatedPubMedArticles Elicker, K. S.; Hutson, L. D.: Genome-wide analysis and expression profiling of the small heat shock proteins in zebrafish. Gene. 2007 Nov 15;403(1-2):60-9. Epub 2007 Aug 19. PMID:17888590 Marvin, M.; O'Rourke, D.; Kurihara, T.; Juliano, C. E.; Harrison, K. L.; Hutson, L. D.: Developmental expression patterns of the zebrafish small heat shock proteins. Dev Dyn. 2008 Feb;237(2):454-63. PMID:18161059NCBI Resource Coordinators.: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 41(Database issue):D8-D20. 2013. PMID:23193264
Kersey, P. J.; Allen, J. E.; Christensen, M.; et al.: Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Res. 2013. PMID:24163254
Sigrist, C. J. A.; de, Castro, E; Cerutti, L; Cuche, B. A.; Hulo, N.; Bridge, A.; Bougueleret, L. Xenarios, I.: New and continuing developments at PROSITE. Nucleic Acids Res. doi: 10.1093/nar/gks1067. 2012. PMID:23161676
Punta, M.; Coggill, P. C.; Eberhardt, et al.: The Pfam protein families database. Nucleic Acids Res. 40(Database Issue):D290-D301. 2012. PMID:22127870
Hunter, S.; Jones P.; Mitchell A.; et al.: Interpro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. doi: 10.1093/nar/gkr948. 2011. PMID:22096229
Carbon, S.; Ireland, A.; Mungall, C. J.; Shu, S.; Marshall, B.; Lewis, S.; AMIGO Hub; Web Presence Working Group.: AMIGO: online access to ontology and annotation data. Bioinformatics. 25(2):288-9. 2009. PMID:19033274
Ashburner, M.; Ball, C. A.; Blake, J. A.; et al. The Gene Ontology Consortium.: Gene ontology: tool for the unification of biology. Nat. Genet. 25(1):25-9. 2000. PMID:10802651
Sherry, S. T.; Ward, M. H.; Kholodov, M.; Baker, J.; Phan, L.; Smigielski, E. M.; Sirotkin, K.: dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 1;29(1):308-11. 2001. PMID:11125122
Bradford, Y.; Conlin, T.; Dunn, N.; et al.: ZFIN: enhancements and updates to the zebrafish model organism database. Nucleic Acids Res. 39(suppl 1):D822-D829. 2011. PMID:21036866
Kapushesky, M.; Adamusiak, T.; Burdett, T.; et al.: Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Res. 40(Database isue):D1077-81. 2012. PMID:22064864

Web resources:
NCBI: http://www.ncbi.nlm.nih.gov/
PFAM: http://pfam.sanger.ac.uk/
PROSITE: http://prosite.expasy.org/
Interpro: http://www.ebi.ac.uk/interpro/
ZFIN: http://zfin.org/
Expression Atlas (EMBL): http://www.ebi.ac.uk/gxa/
Ensembl: http://asia.ensembl.org/Danio_rerio/
Database of Single Nucleotide Polymorphisms (dbSNP). Bethesda (MD): National Center for Biotechnology Information, National Library of Medicine.: http://www.ncbi.nlm.nih.gov/SNP/
PRINTS from Genomenet: http://www.genome.jp/
European Nucleotide Archive: http://www.ebi.ac.uk/ena/home
UNIGENE: http://www.ncbi.nlm.nih.gov/unigene/
AMIGO Gene Ontology: http://amigo.geneontology.org
Topic revision: r3 - 2013-08-31 - AnkitSabharwal
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