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basic leucine zipper nuclear factor 1

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GeneName blzf1
Aliases ENSDARG:ENSDARG00000011299; fe06a04, wu:fe06a04, zgc:85871, zgc:66280
Description basic leucine zipper nuclear factor 1
GenomicLocation chromosome 1 368922-380317 forward strand
ExternalIDs Entrez:114452; EMBL:BC070020; UniGene:122371; ZFIN:ZDB-GENE-010724-1;
TranscriptID ENSDART:ENSDART00000114850; ENSDART:ENSDART00000114850; ENSDART:ENSDART00000108579; ENSDART:ENSDART00000108579; ENSDART:ENSDART00000146732; ENSDART:ENSDART00000146732; ENSDART:ENSDART00000134581; ENSDART:ENSDART00000134581; ENSDART:ENSDART00000109415; ENSDART:ENSDART00000109415
mRNA NCBI:NM_001144803
GeneDescription blzf1 belongs to a Na,K-ATPase gene family, which is an integral membrane protein responsible for establishing and maintaining the electrochemical gradients of sodium and potassium ions across the plasma membrane of virtually all animal cells.It has α and β subunits .
GeneFunction Woods et al. (2005) performed comparative mapping of genes and identified blzf1 orthologous to that of human gene.Rajarao et al. (2001) identified blzf1 as a syntenic marker in zebrafish to humans. It has a conserved synteny and is orthologous to the1q24 human gene.
GeneCloning The gene is contained in BAC clone (CH73-41E3)(Vector: pTARBAC20
GeneStructure This gene encodes for 5 transcripts.The transcript ENSDART00000108579 consists of 7 exons and is 2.896 bps in length. The protein product ENSDARP00000102207 consists of 394 residues.The transcript ENSDART00000109415 consists of 7 exons and is 2.292 bps in length. The protein product ENSDARP00000098212 consists of 394 residues.The transcript ENSDART00000114850 consists of 7 exons and is 2.965 bps in length. The protein product ENSDARP00000102524 consists of 463 residues.The transcript ENSDART00000134581 consists of 3 exons and is 383 bps in length. The protein product ENSDARP00000122589 consists of 63 residues.The transcript ENSDART00000146732 consists of 4 exons and is 508 bps in length. The protein product ENSDARP00000119328 consists of 117 residues
Protein ENSDARP00000102524 ENSDARP00000102524 ENSDARP00000102207 ENSDARP00000102207 ENSDARP00000119328 ENSDARP00000119328 ENSDARP00000122589 ENSDARP00000122589 ENSDARP00000098212 ENSDARP00000098212
ProteinDomainandFamilies has domain InterPro:IPR013183;
Motifs has motif PFAM:PF08227; PRINTS:PR00806;
Expression ArrayExpress:ENSDARG00000011299;
GeneOntology GO:0007030 ; GO:0043001 ; GO:0005622
Orthologs Entrez:8548;
VariationAndRepeats RSID:rs40863220; RSID:rs40797524;

RelatedPubMedArticles Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S.: The zebrafish gene map defines ancestral vertebrate chromosomes. PMID:16109975 . Rajarao, S.J.; Canfield, V.A.; Mohideen, M.A.; Yan, Y.L.; Postlethwait, J.H.; Cheng, K.C.; Levenson, R.: The repertoire of Na,K-ATPase alpha and beta subunit genes expressed in the zebrafish, Danio rerio. PMID:11435403 . NCBI Resource Coordinators.: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 41(Database issue):D8-D20. 2013. PMID:23193264
Kersey, P. J.; Allen, J. E.; Christensen, M.; et al.: Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Res. 2013. PMID:24163254
Sigrist, C. J. A.; de, Castro, E; Cerutti, L; Cuche, B. A.; Hulo, N.; Bridge, A.; Bougueleret, L. Xenarios, I.: New and continuing developments at PROSITE. Nucleic Acids Res. doi: 10.1093/nar/gks1067. 2012. PMID:23161676
Punta, M.; Coggill, P. C.; Eberhardt, et al.: The Pfam protein families database. Nucleic Acids Res. 40(Database Issue):D290-D301. 2012. PMID:22127870
Hunter, S.; Jones P.; Mitchell A.; et al.: Interpro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. doi: 10.1093/nar/gkr948. 2011. PMID:22096229
Carbon, S.; Ireland, A.; Mungall, C. J.; Shu, S.; Marshall, B.; Lewis, S.; AMIGO Hub; Web Presence Working Group.: AMIGO: online access to ontology and annotation data. Bioinformatics. 25(2):288-9. 2009. PMID:19033274
Ashburner, M.; Ball, C. A.; Blake, J. A.; et al. The Gene Ontology Consortium.: Gene ontology: tool for the unification of biology. Nat. Genet. 25(1):25-9. 2000. PMID:10802651
Sherry, S. T.; Ward, M. H.; Kholodov, M.; Baker, J.; Phan, L.; Smigielski, E. M.; Sirotkin, K.: dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 1;29(1):308-11. 2001. PMID:11125122
Bradford, Y.; Conlin, T.; Dunn, N.; et al.: ZFIN: enhancements and updates to the zebrafish model organism database. Nucleic Acids Res. 39(suppl 1):D822-D829. 2011. PMID:21036866
Kapushesky, M.; Adamusiak, T.; Burdett, T.; et al.: Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Res. 40(Database isue):D1077-81. 2012. PMID:22064864

Web resources:
NCBI: http://www.ncbi.nlm.nih.gov/
PFAM: http://pfam.sanger.ac.uk/
PROSITE: http://prosite.expasy.org/
Interpro: http://www.ebi.ac.uk/interpro/
ZFIN: http://zfin.org/
Expression Atlas (EMBL): http://www.ebi.ac.uk/gxa/
Ensembl: http://asia.ensembl.org/Danio_rerio/
Database of Single Nucleotide Polymorphisms (dbSNP). Bethesda (MD): National Center for Biotechnology Information, National Library of Medicine.: http://www.ncbi.nlm.nih.gov/SNP/
PRINTS from Genomenet: http://www.genome.jp/
European Nucleotide Archive: http://www.ebi.ac.uk/ena/home
UNIGENE: http://www.ncbi.nlm.nih.gov/unigene/
AMIGO Gene Ontology: http://amigo.geneontology.org
Topic revision: r2 - 2013-07-26 - DivyaJagga02
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