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Bivm

basic, immunoglobulin-like variable motif containing

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GeneInformationForm
GeneName Bivm
Aliases ENSDARG:ENSDARG00000061409
Description basic, immunoglobulin-like variable motif containing
GenomicLocation Chromosome 6: 20,725,965-20,735,787 reverse strand
ExternalIDs Entrez:555455; EMBL:AF411390; ZFIN:ZDB-GENE-010822-3;
TranscriptID ENSDART:ENSDART00000132456; ENSDART:ENSDART00000087563
mRNA NCBI:NC_007117
GeneDescription BIVM consists of conserved short sequence motifs within the variable region of immunoglobulin (Ig) genes.
GeneFunction Yoder et al. (2002) identified BIVM orthologs in zebrafish. The carboxy-terminal region of BIVM shared the highest degree of interspecies sequence identity. This highly conserved region spans 220 aminoacids in human. The corresponding region in zebrafish is 87% identical to the human sequence. They also mapped BIVM to human chromosome 13q32q33 and suggested the gene to encode 503-amino-acid protein with a pI of 9.1. The 5 untranslated region of BIVM encoded two exons; the coding portion is encoded in nine exons. The observed ubiquitous expression of BIVM in normal tissues and the presence of a 5 CpG island which suggests BIVM to be a housekeeping gene.
GeneCloning Yoder et al. (2002) identified anonymous EST (IMAGE 785450; GenBank acc. no. AA449273) and cloned the corresponding full-length cDNA. The predicted structure of the protein encoded by this gene, termed BIVM included short peptide motifs characteristic of an immunoglobinIg) variable(V) region.
GeneStructure This gene encodes for two transcripts. The transcript ENSDART00000132456 has 10 exons and 1946 bp and transcript ENSDART00000087563 has 9 exons and 1521 bp
Protein ENSDARP00000121055 ENSDARP00000081997
ProteinDomainandFamilies has domain
Motifs has motif
Expression

GeneOntology

Orthologs Entrez:54841 ; Entrez:246229
VariationAndRepeats RSID:rs40711038; RSID:rs40711038; RSID:rs40775024; RSID:rs40775024; RSID:rs40822372; RSID:rs40822372; RSID:rs41101791; RSID:rs41101791
DisordersAndMutations

RelatedPubMedArticles Yoder, J. A.; Hawke, N. A.; Eason, D. D.; Mueller, M. G.; Davids, B. J.; Gillin, F. D.; Litman, G. W.: BIVM, a novel gene widely distributed among deuterostomes, shares a core sequence with an unusual gene in Giardia lamblia. Genomics. 2002 Jun;79(6):750-5. PMID:12036287 NCBI Resource Coordinators.: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 41(Database issue):D8-D20. 2013. PMID:23193264
Kersey, P. J.; Allen, J. E.; Christensen, M.; et al.: Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Res. 2013. PMID:24163254
Sigrist, C. J. A.; de, Castro, E; Cerutti, L; Cuche, B. A.; Hulo, N.; Bridge, A.; Bougueleret, L. Xenarios, I.: New and continuing developments at PROSITE. Nucleic Acids Res. doi: 10.1093/nar/gks1067. 2012. PMID:23161676
Punta, M.; Coggill, P. C.; Eberhardt, et al.: The Pfam protein families database. Nucleic Acids Res. 40(Database Issue):D290-D301. 2012. PMID:22127870
Hunter, S.; Jones P.; Mitchell A.; et al.: Interpro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. doi: 10.1093/nar/gkr948. 2011. PMID:22096229
Carbon, S.; Ireland, A.; Mungall, C. J.; Shu, S.; Marshall, B.; Lewis, S.; AMIGO Hub; Web Presence Working Group.: AMIGO: online access to ontology and annotation data. Bioinformatics. 25(2):288-9. 2009. PMID:19033274
Ashburner, M.; Ball, C. A.; Blake, J. A.; et al. The Gene Ontology Consortium.: Gene ontology: tool for the unification of biology. Nat. Genet. 25(1):25-9. 2000. PMID:10802651
Sherry, S. T.; Ward, M. H.; Kholodov, M.; Baker, J.; Phan, L.; Smigielski, E. M.; Sirotkin, K.: dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 1;29(1):308-11. 2001. PMID:11125122
Bradford, Y.; Conlin, T.; Dunn, N.; et al.: ZFIN: enhancements and updates to the zebrafish model organism database. Nucleic Acids Res. 39(suppl 1):D822-D829. 2011. PMID:21036866
Kapushesky, M.; Adamusiak, T.; Burdett, T.; et al.: Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Res. 40(Database isue):D1077-81. 2012. PMID:22064864

Web resources:
NCBI: http://www.ncbi.nlm.nih.gov/
PFAM: http://pfam.sanger.ac.uk/
PROSITE: http://prosite.expasy.org/
Interpro: http://www.ebi.ac.uk/interpro/
ZFIN: http://zfin.org/
Expression Atlas (EMBL): http://www.ebi.ac.uk/gxa/
Ensembl: http://asia.ensembl.org/Danio_rerio/
Database of Single Nucleotide Polymorphisms (dbSNP). Bethesda (MD): National Center for Biotechnology Information, National Library of Medicine.: http://www.ncbi.nlm.nih.gov/SNP/
PRINTS from Genomenet: http://www.genome.jp/
European Nucleotide Archive: http://www.ebi.ac.uk/ena/home
UNIGENE: http://www.ncbi.nlm.nih.gov/unigene/
AMIGO Gene Ontology: http://amigo.geneontology.org
Topic revision: r2 - 2013-07-26 - DivyaJagga02
 
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