Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001697

Transcript Name: LOC796505ia
Type: Intronic
Genomic Location: chr5:2092897-2095641
Nearest Gene: LOC796505 (NM_001100057)


LOC796505ia
Exons
20928972095641




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0.99 -0.26 0.47 1.02 1.37 0.46 0.72 -0.52 0.51 0 0.11 0 0.06 0.69 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence

Variant Information


Variant PositionrsIDReferenceAlternate
2092911 rs179629924 G C
2095601 rs179629913 A T

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: