Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001687

Transcript Name: rakt2
Type: lincRNA
Genomic Location: chr4:62082932-62084352
Nearest Gene: terfa (NM_173243)


rakt2
Exons
6208293262084352





Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0.52 0.56 1.29 2.31 2.56 2.15 2.13 1.81 1.88 1.15 0.25 2.43 0 1.15 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 70-141 MFWTYSCYVLDIFRLCSGYILVMF
2. 235-288 MSRLCSGFIQVMFWIYSG
3. 48-389 MFWTYSGYVLDIFLLCSGHIQVMFWIYSCYVLNIFRLCSGHIQVMFWIYSCYVLNIFRLCSGYVQVMFWIYSGYVLDIFWLSSGYIQVITHLCSSLVRLCSGYARYVLDVFWLR
4. 2-406 MFWIYPGYVLDINSGYVLDIFRLCSGHILVMFWTYSGYVLDIFLLCSEYIQVMFWTYSGYVLDIFLLCSEYIQVMFWICPGYVLDLFRLCSGYILVKFWIYSGNNSFMFKFSQVMFWLCTLCFGCILVTLNLCSN
5. 355-522 MHVMFWMYSGYVKFMFKLKSGYVQDMLMLCSEYVDVLFWTCSDYDLDIFRLCNIYV
6. 458-529 MFCSGHVLIMIWIYSDYVTFMFEL
7. 556-600 MDIYSGYGLDTFRFC
8. 540-689 MFMSCYGYIFWLWSGYIQVLLTLCLLYSGYVQDMFRLFSGFVHVLDIFYL
9. 551-790 MLWIYILVMVWIHSGFVNFMLVIFRLCTGYVQVIFWICSCSGYILLIVWIYSGYGLVLLNLCLLYSGFWSGYVLVMVNLC
10. 628-858 MYRICSGYFLDLFMFWIYSTYSLDIFRLWSSFVKFMLVIFRILVRICSGYGKLMLKLGSRYVQTIIWINLGYGLVMF
11. 862-912 MCSRSDITNQESTSITF
12. 842-961 MVWLCSRCVQDRISQTKSQQALLFKVSHLSFSFSKLKITA
13. 1028-1063 MVPTKPVCTGLV
14. 1114-1194 MEQAPDPLNLLVMFTSSSSQCVYSVVH
15. 1206-1262 MIETEITLFDEEKQCLCLQ
16. 1234-1332 MKRSSVCVYNKLYYSDCKAYHTHTHTRLFNVSN
17. 1322-1381 MFQTNLVKANVKMSLKLSQS

Variant Information


Variant PositionrsIDReferenceAlternate
62083530 rs41250719 T A

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: