Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001686

Transcript Name: lnc_terfa
Type: lincRNA
Genomic Location: chr4:62082931-62084360
Nearest Gene: terfa (NM_173243)


lnc_terfa
Exons
6208293162084360






Expression Information

Negligible Expression across RNA-Seq datasets





Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 78-149 MFWTYSCYVLDIFRLCSGYILVMF
2. 243-296 MSRLCSGFIQVMFWIYSG
3. 56-397 MFWTYSGYVLDIFLLCSGHIQVMFWIYSCYVLNIFRLCSGHIQVMFWIYSCYVLNIFRLCSGYVQVMFWIYSGYVLDIFWLSSGYIQVITHLCSSLVRLCSGYARYVLDVFWLR
4. 10-414 MFWIYPGYVLDINSGYVLDIFRLCSGHILVMFWTYSGYVLDIFLLCSEYIQVMFWTYSGYVLDIFLLCSEYIQVMFWICPGYVLDLFRLCSGYILVKFWIYSGNNSFMFKFSQVMFWLCTLCFGCILVTLNLCSN
5. 363-530 MHVMFWMYSGYVKFMFKLKSGYVQDMLMLCSEYVDVLFWTCSDYDLDIFRLCNIYV
6. 466-537 MFCSGHVLIMIWIYSDYVTFMFEL
7. 564-608 MDIYSGYGLDTFRFC
8. 548-697 MFMSCYGYIFWLWSGYIQVLLTLCLLYSGYVQDMFRLFSGFVHVLDIFYL
9. 559-798 MLWIYILVMVWIHSGFVNFMLVIFRLCTGYVQVIFWICSCSGYILLIVWIYSGYGLVLLNLCLLYSGFWSGYVLVMVNLC
10. 636-866 MYRICSGYFLDLFMFWIYSTYSLDIFRLWSSFVKFMLVIFRILVRICSGYGKLMLKLGSRYVQTIIWINLGYGLVMF
11. 870-920 MCSRSDITNQESTSITF
12. 850-969 MVWLCSRCVQDRISQTKSQQALLFKVSHLSFSFSKLKITA
13. 1036-1071 MVPTKPVCTGLV
14. 1122-1202 MEQAPDPLNLLVMFTSSSSQCVYSVVH
15. 1214-1270 MIETEITLFDEEKQCLCLQ
16. 1242-1340 MKRSSVCVYNKLYYSDCKAYHTHTHTRLFNVSN
17. 1330-1389 MFQTNLVKANVKMSLKLSQS
18. 70-141 MFWTYSCYVLDIFRLCSGYILVMF
19. 235-288 MSRLCSGFIQVMFWIYSG
20. 48-389 MFWTYSGYVLDIFLLCSGHIQVMFWIYSCYVLNIFRLCSGHIQVMFWIYSCYVLNIFRLCSGYVQVMFWIYSGYVLDIFWLSSGYIQVITHLCSSLVRLCSGYARYVLDVFWLR
21. 2-406 MFWIYPGYVLDINSGYVLDIFRLCSGHILVMFWTYSGYVLDIFLLCSEYIQVMFWTYSGYVLDIFLLCSEYIQVMFWICPGYVLDLFRLCSGYILVKFWIYSGNNSFMFKFSQVMFWLCTLCFGCILVTLNLCSN
22. 355-522 MHVMFWMYSGYVKFMFKLKSGYVQDMLMLCSEYVDVLFWTCSDYDLDIFRLCNIYV
23. 458-529 MFCSGHVLIMIWIYSDYVTFMFEL
24. 556-600 MDIYSGYGLDTFRFC
25. 540-689 MFMSCYGYIFWLWSGYIQVLLTLCLLYSGYVQDMFRLFSGFVHVLDIFYL
26. 551-790 MLWIYILVMVWIHSGFVNFMLVIFRLCTGYVQVIFWICSCSGYILLIVWIYSGYGLVLLNLCLLYSGFWSGYVLVMVNLC
27. 628-858 MYRICSGYFLDLFMFWIYSTYSLDIFRLWSSFVKFMLVIFRILVRICSGYGKLMLKLGSRYVQTIIWINLGYGLVMF
28. 862-912 MCSRSDITNQESTSITF
29. 842-961 MVWLCSRCVQDRISQTKSQQALLFKVSHLSFSFSKLKITA
30. 1028-1063 MVPTKPVCTGLV
31. 1114-1194 MEQAPDPLNLLVMFTSSSSQCVYSVVH
32. 1206-1262 MIETEITLFDEEKQCLCLQ
33. 1234-1332 MKRSSVCVYNKLYYSDCKAYHTHTHTRLFNVSN
34. 1322-1381 MFQTNLVKANVKMSLKLSQS

Variant Information


Variant PositionrsIDReferenceAlternate
62083530 rs41250719 T A

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: