Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001680

Transcript Name: dopey2oa2
Type: Overlapping
Genomic Location: chr4:61147339-61149974
Nearest Gene: dopey2 (NM_200610)


dopey2oa2
Exons
6114733961149974




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 3.04 2.42 1.88 1.76 1.79 0.15 0.43 -0.46 -1.28 3.63 0 1.01 0 0.53 2.04



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 77-118 MHRKLDFKFLLKSV
2. 213-272 MSPVEVWRTEDPVEDPSLAF
3. 295-357 MWCFLAKCKEQRNQSESRRQQ
4. 418-486 MHMGLRILKKPGLLNLDPGVVLA
5. 583-663 MIRIRTGLKIHKQPGLLNLDPGVVLEK
6. 754-834 MIQLHMGLKVLKQPGLLNLYPGVVFEE
7. 931-1008 MILIHKGVRILKQPGLLNLDPGVVLA
8. 1105-1161 MIQLHMGLKILKLTDLWYL
9. 1300-1380 MIQLHMGLKVLKQPGLLNLYPGVVFAE
10. 1477-1557 MIRRCMGLKIHKQPGLLDLDPQVVLAK
11. 1669-1734 MGLKVLNQPGLLNLYPGVVFAE
12. 1825-1905 MIQIRMGLKIHKQPGLLNLDPGVVLAK
13. 1999-2097 MIQLHMGLKIRKLTDLWYLESGFFHHMWYLLAK
14. 2209-2250 MGMKTLEQTDLYLG
15. 2199-2261 MVAYGDEDPGANGLVPWVVTP
16. 2425-2466 MTLHHSSQIDPQAE

Variant Information


Variant PositionrsIDReferenceAlternate
61147465 rs40628415 A G,T
61147485 rs41211395 A G

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: