Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001679

Transcript Name: dopey2oa1
Type: Overlapping
Genomic Location: chr4:61139037-61145088
Nearest Gene: dopey2 (NM_200610)


dopey2oa1
Exons
6113903761145088





Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 3.07 2.78 2.27 2.1 1.97 0.59 0.28 0 -0.51 2.19 0 1.4 -0.3 1 2.6



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 44-109 MGLKIHKQPGLFDLDPRVVLAT
2. 221-286 MGLKVLKQPGLLNLYPGVVFAE
3. 383-463 MIQIRMGLKIHKQPGLLNLDPGVVLAK
4. 557-655 MIQLHMGLKILKLTDLWYLESGFFHHMWYLLAK
5. 604-687 MVSGVWILPSYVVLACKVKGAEDPVWVP
6. 767-808 MGMKTLEQTDLYLG
7. 757-819 MVAYGDEDPGANGLVPWVVTP
8. 1354-1401 MVKRSPILQTIWIKTE
9. 1544-1606 MQNQGHSSKIAGRLLARVTYR
10. 1507-1686 MRREIHTNSNYLHAKPGAFFQNCRKTTSKSNLQVERESINTLIIFKNSIFAEPNTHSAAG
11. 1758-1826 MIPNPHKQATDPSMHSVGGKCVL
12. 1845-1907 MKSLITETLFTWGNHWLLKDN
13. 1914-2156 MFCEGSDSLCCSNIVKQLIPAFHCLLGSVNKSIRYFYRVFYCLIYQFSWIVHCIVYLFTSILIILHLPTTNRINCVVACFI
14. 2147-2263 MFYIVFIQYISLDIAFFALKYQHDLTAIRNFSYDLIHTI
15. 2287-2445 MTVGVPCLLFKIVHFHTTQLHTNSYELATKLTKRKILTFPCEIRLKSHICRQV
16. 2465-2593 MTKEEMSIDHLFRHNLRKGTKAMLFVLCSSIILDFDASTYSVA
17. 2571-2618 MRQPTQSLNLSNCDSH
18. 2898-2930 MALTTFTMMIH
19. 3184-3264 MQLRTRCILNGQTSQYTLKTPSFCKQL
20. 3363-3410 MFSPSERSLLSVPGKK
21. 3426-3470 MTVSYSNHTCLLLNL
22. 3593-3634 MHRKLDFKVLIKSV
23. 3729-3788 MSPVEVWRTEDPVEDPSLAF
24. 3811-3873 MWCFLAKCKEQRNRSESRRQQ
25. 3934-4002 MHMGLRILKKPGLLNFDPGVVLA
26. 4099-4179 MIRIRTGLKIHKQPGLLNLDPGVVLAK
27. 4285-4350 MGLKVLKQPGLLNLYPGVDFAE
28. 4444-4581 MIQLHMGLILKLTDLWYLQSGSDHHMWYFLAKLKVQRIRSGCHRQK
29. 4651-4716 MGLKIHKQPGLFDLDPRVVLAK
30. 4828-4893 MGLKVLKQPGLLNLYPGVALAK
31. 5005-5070 MGLKVLKQPGLLNLYPGVVFAE
32. 5167-5247 MIQIRMGLKIHKQPGLLNLDPGVVLAK
33. 5341-5439 MIQLHMGLKILKLTDLWYLESRFFHHMWYLLAK
34. 5551-5592 MGMKTLEQTDLYLG
35. 5541-5603 MVAYGDEDPGANGLVPWVVTP
36. 6010-6051 MADPTTGQHLDKLN

Variant Information


Variant PositionrsIDReferenceAlternate
61144644 rs41091220 G A
61144649 rs40892404 A G
61144673 rs40776018 A G
61144710 rs40916710 A G
61144736 rs40625061 A G,T
61144795 rs40595541 A G
61144803 rs40604620 A G
61144814 rs40616591 A C,G
61144857 rs40750493 G A
61144926 rs41180855 A G
61144939 rs40774081 T C
61144945 rs40596991 T C
61144958 rs40721069 A G
61144973 rs40593137 T C
61144978 rs41092702 G T
61144979 rs41038561 C T
61145007 rs41132040 A G
61145019 rs40943271 A G
61145025 rs41114390 A G
61145034 rs41080824 A G
61145048 rs41103714 T C
61145050 rs40775213 G C
61145061 rs40971694 C T
61145078 rs40613028 A G

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: