Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001678

Transcript Name: lnc_ms4a17a.4
Type: lincRNA
Genomic Location: chr4:60930677-60947166
Nearest Gene: ms4a17a.4 (NM_001102638)


lnc_ms4a17a.4
Exons
6093067760947166




Expression Information

Negligible Expression across RNA-Seq datasets





Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 131-211 MPKHKVSRKPVLFEFLLLATTKLIDVM
2. 433-483 MKFTKLRGMKHDEIIFK
3. 723-767 MKIHGISQLREGECK
4. 988-1074 METDKNRIIITASQSRKSITEVEKNKKFN
5. 1194-1235 MIIIRLIIIIIIII
6. 1255-1302 MMMIRLIIIIIIMGTI
7. 1362-1406 MPKVRVRYTQYRYIS
8. 1428-1469 MNEYSNKEINLPNK
9. 1592-1633 MKRNGKRMKKITWS
10. 1694-1726 MYKLLQVHLAK
11. 1740-1787 MEREFDKVFEEDETLF
12. 1833-1877 MSGTEINKKQELKRN
13. 2141-2173 MRGTPKRKSRK
14. 2101-2316 MTNFLLCHNLALADEGHAQAKEQKMRSEHSDSQSRSEKKNKGTKGSVGGVYPVIKATPSAPIQDFRVTDSQK
15. 2323-2418 MNQKLGSAQESMQKVREALTQKLVSDNTRSNV
16. 2531-2560 MVETNTSHGA
17. 2569-2628 MHAIMERITTCYQRGRQLAS
18. 2573-2677 MLLWKELPHVTKGGDNWLARVISLTQGHRLGFFKV
19. 2745-2828 MSKIFLFTFFLFFSTSSKKYKIYPKILF
20. 2862-2903 MKTAKSMMHLNYIA
21. 3377-3547 MAESTESCVKAALKEKPDIPGSAPATCERHLTHRMNRAEDKADESLKSRKKKLLLKL
22. 3566-3619 MSMVRTKKKKQSTIGAVT
23. 3705-3749 MRVQWGPRADRGRER
24. 3806-3841 MLHVQSRGTHFN
25. 3885-3980 MQEGRGFMAQYTGLALNPGRQNPERGGTLYPL
26. 4199-4243 MCVEFLWVSHTSICF
27. 4216-4266 MGFTHQYLLLTRKSFSQ
28. 4035-4316 MEEPVLSMDFNEHHLNFLVDTQATYSMLVTKVDRDLISQKKKKKKKLEVMAFSEKCVSSSYGFHTPVSASNSKELQPITGDTGNNSKAFSAFVF
29. 4633-4665 MHKIMNYSATK
30. 4590-4697 MNSMINLILCTKYYNAQNNELQRNKIVAVFYIAHIL
31. 4697-4765 MNKAMHVAVLVIRNSQFSYHQCP
32. 4894-5043 MHLPCEFFFFPHSLGTSRISSALPVSPRQVPYLLGKLRQPIASAKHFQFR
33. 4784-5053 MCLPFLTHCSLKLSACNRESLLMQRSRSSAFTARLHACTCHVSFFSFRIHSALPVSPRHFPYLLGKFRISSASSVSQLLPPNTFSFVSSA
34. 5775-5807 MRTAASAAPFL
35. 5825-5872 MDLPNPFSSVFSSFCL
36. 5881-5916 MFLTCPGTCKVL
37. 5975-6007 MTPQSRESLVG
38. 6042-6077 MSVCIALDAIQQ
39. 6064-6096 MPYSSKRFPKL
40. 6101-6151 MYSLPHFILYYVWSKQV
41. 6136-6210 MVQTGLKLCIQRVLLVLSFQEEGLP
42. 6132-6344 MYGPNRSKVVYSKGAAGSVLSGGRSAMICSHLFALAFLQITQLSTTFLASLRPLITHAFFLILRSVPATSS
43. 6388-6429 MHYKVILGLQSFLH
44. 6378-6527 MDTHALQGNIGTAIFSSLKICILPPQTKSPEFSLYTASLLSVVSGKVTPC
45. 6582-6638 MVCLILFCNTSFLFLSFES
46. 6687-6884 MTLTSLVKLLYFSSSTSFLIIKSRGVPFGKFGLFPFSPESETTLIESPRIETSGIPLPASARSLFV
47. 7068-7166 MMSAILTSPGIHHQSLTDPDFWISPTLFAKKVW
48. 7250-7330 MLFKVLPESCSENCTADFSLHSISFLV
49. 7576-7623 MSHGLDSPFLSLGKLS
50. 7569-7676 MSHVSRVRLPFPVSWKAFLTRIAPFCLAGVTRPTGS
51. 7800-7904 MEAMMYSLSSSTKYPVPKALLSSSRSWFGSMIVLD
52. 7978-8064 MVSVQIRQLLESPLAHLLSLSVSPGYYGM
53. 8057-8116 MGCKDVIHITVLLKDSALFF
54. 8120-8158 MSKLCQPSCLTHS
55. 8169-8234 MHPAGRSPMLTLVIAYSLISSS
56. 8310-8426 MSPRAANTPFLNLSKTALIGLSTSGPFNRRSFMLSPLNF
57. 8592-8666 MSCHSGTFFSCFSVLRKAASTPLLL
58. 8695-8751 MDTLYPSVELCCGYLFQHM
59. 8468-8791 MRIWCYQVTNIPNRSLPFLNYLFSKLCCCTPFHHVMDLSCINVLPFWYLFQLLFCSEESSFYSTSVVRKCSWVLNPWILCIPVWSCAVGIYFNICETLSYNLQFSFFC
60. 8979-9170 MISSYLAAAVLMDRAKCVLDSYAAISTTSNKSGCAPATVFPSGLSHRTRSPTIFTLCGASLPSR
61. 9043-9174 MQPYPPLQTNQGVLQPLFSPAGCPTGQDPQQSSLFVERVCPLGD
62. 9026-9214 MCFGLVCSHIHHFKQIRVCSSHCFPQRAVPQDKIPNNLHSLWSESALSVTDEEIYFSWSFQFF
63. 9177-9251 MRRSIFPGLFSSSNSTSGKNSLSFS
64. 9266-9406 MNFGNFFQTIADQLMSLHCPLRSFDSNPEKVSICAYSDCHLANSMNH
65. 9452-9556 MGDIVCIRSQIYQSANLLSCIRGYFHQHHDNRKLL
66. 9628-9723 MLFCISQPILEKVQPGNVPALQSIHFLFYYLY
67. 9537-9776 MITGSSFNPLLLTNPCWSFPEQFIILTLLVNAFLHFSANSGESSARKCSCSAVNPLPFLLSLLMVFPSFRFLRSHFGQRK
68. 9677-9787 MFLLCSQSTSFSTIFTDGFPFIQVLEVPFWTEEVMVV
69. 9857-9886 MNSQALFACS
70. 9897-10031 MIDFFSVSFKSLNFLQKKILSLCFSAPHTMQPASVESFFVVLVKA
71. 9962-10072 MFLCPTHDATSFCGVFLCRSSESVILLKFSFWLFHSF
72. 10161-10451 MLFAGSVIYTSHSLFKSSGNLLSMDFITRGFFIAPTFPRSVRSAKAFSTIWINSITLLGWFPLKAGIFSSSSTISMAIVILLPYRLSNTLNMSSAVL
73. 10644-10790 MICPAGTIMFGLFVILVSNACVSSAALRAQANSAFLDSSSLLHSFSLRT
74. 10790-10840 MTFKILSLRCWNPSFPF
75. 10699-10929 MLVYLQQLFGPKRIQLFLIQAHCYTLSVCEHDFQDPFSQVLESIFPILAKLQLPLSPVSSRAPVALHNFHIQCHQQA
76. 11329-11487 MLPQPFSLNFSFTWCQQNFVFGRHKAVDLYVQLLHSWLSTVEFLWVSHTSICF
77. 11460-11510 MGFTHQYLLLTRKSFSQ
78. 11417-11560 MSSCYTLGYQLSSSYGFHTPVSASNSKELQPITGDTGNNSKAFSAFVF
79. 11877-11909 MHKIMNYSATK
80. 11834-11941 MNSMINLILCTKYYNAQNNELQRNKIVAVFYIAHIL
81. 11941-12009 MNKAMHVAVLVIRNSQFSYHQCP
82. 12138-12287 MHLPCEFFFFPHSLGTSRISSALPVSPRQVPYLLGKLRQPIASAKHFQFR
83. 12028-12297 MCLPFLTHCSLKLSACNRESLLMQRSRSSAFTARLHACTCHVSFFSFRIHSALPVSPRHFPYLLGKFRISSASSVSQLLPPNTFSFVSSA
84. 12572-12601 MEGQWLLSSA
85. 12688-12759 MEILGNPYCTIHAFQRPNTHDFIL
86. 12722-12796 MPFSDLTHMTLFYNRNQTKWDQETF
87. 12816-12863 MIGKLGEREFGWKKKE
88. 12908-13012 MKGPEAEPHVKLTIHLEHQAKDSGPMIKGLSKLTD
89. 13035-13067 MYFIHHQIKHI
90. 13118-13153 MVVMEGTEQIMS
91. 13165-13242 MLNRLPGQLWSTGPTDVYFCSLASDN
92. 13191-13247 MVHGTNRCVFLFLGVRQLN
93. 13211-13453 MCIFVPWRQTIELTENRLIGQPHYSYKPQGETVIADTIEELITVGVLEPSNSQQNFTPNLSVEKQNTGNYRMAHGKKRLTL
94. 13477-13521 MPKSIHCTISIESRT
95. 13866-13943 MGRVVSGLGMGISPNHRSVILKNKKR
96. 13943-13990 MTIKDMLSFLGLACVQ
97. 14168-14206 MCQKQKRQWKSIV
98. 14272-14349 MPASIYKICSKVRKDNSENSTSDHGT
99. 14228-14539 MVLMHLSFLMDKAEQCQLPSTRFAAKLEKIIQKTAHLIMGHKVKMLTSHSEKAYVNSIAVTMSLLRQNRLLKVLSAPTNLIFTHEGINMADYMVERESHTIAKS
100. 14478-14552 MKASTWLTIWLRGRATQLRRVSLGG
101. 14665-14718 MQTKIGTDQIKLGKGLTN
102. 14726-14926 MGIKSSLNKTMSFTRFELLTGHHYPEPGAALTCTDSAPLMNKPYYDKLTALLSDFSEQIFVKCLEGA
103. 14911-14949 MPGGGLRKSGPYI
104. 15065-15115 MIVMECLCFKQIHQTGS
105. 15128-15169 MAAMSKIKAERGSA
106. 15327-15509 MTTRKCAITKEGQRTVFCLITKEKVTDLPTDDNLTRTFEVLIFILINVLILPIMLQLLISL
107. 15543-15656 MVLLNFSLEHIFLRVWIPFLIVIKFLKLENFNLNYIDN
108. 15746-15808 MGVFGKTTLNIVGIIFRIRND
109. 15804-15878 MIRMKPWSRETPPLNKRTRGEQIVE
110. 15935-15964 MKEHYVNNKV
111. 15985-16029 MGKGLYLANICNNVN
112. 16022-16198 MLIDFYFLFFFTFRFWLSVVVSSFRGAQKRDFVRNLLLINCSSFISFYECSCVMPMYVI
113. 16164-16226 MNVAVLCQCMLYSCVMFMHVI
114. 16237-16326 MFMYVRQEGPGSVVPRPDNTERKGPHPANS
115. 16247-16354 MYVKRGQGLWCQGQIIQNVKDHTRPIPRTPVVYTCV
116. 16348-16395 MCIKVVGRKELLLKMA

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within the exonic region of the transcript



References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: