Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001674

Transcript Name: lnc3_nup50
Type: lincRNA
Genomic Location: chr4:60108511-60113738
Nearest Gene: nup50 (NM_201580)


lnc3_nup50
Exons
6010851160113738




Expression Information

Negligible Expression across RNA-Seq datasets





Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 130-162 MSSQSWVHLRM
2. 351-431 MKQVNLKCLCVYLRINSAIYPRLPHLV
3. 500-589 MSSCRFSTHPEKTKLKIRKEVIQKQRSQLL
4. 592-654 MGIRTATPDKKHSAMPPVQNP
5. 796-870 MNRFYSPTPIIIRSKHCLIAKSNDI
6. 910-951 MLVCMDVFLCGFST
7. 899-988 MIQACWSVWMSSCVVFRPDATSLTKYLLHQ
8. 996-1052 MRAVNGNCQSRRLTKSVFV
9. 1065-1094 MNNIVIRVYL
10. 1120-1329 MLLFLFVRNICGVHMQLNYGIVHTFFCVTFAMTSVYVMQYYVVTLQFSLYSVEDKVGVMAVHYFTMVKCY
11. 1323-1397 MLLVINQDTNILLKVQFKSLRRLIC
12. 1565-1609 MKSGMKQAKMNKYCG
13. 1635-1679 MIMCYINTFYNALRI
14. 1666-1785 MHYVYRRHKTAVFYLLLTIIWSSSQRTTGFGPVLSCSECN
15. 1928-1969 MKWKYKTRILRKFQ
16. 2066-2137 MDDHDVLHLTVYIFIYACNLCRCT
17. 2112-2159 MLVIYADALDHSSRSK
18. 2125-2163 MQMHLIIPVDLNE
19. 2159-2200 MNEIFPNRAVQIIW
20. 2163-2327 MKSFQIELFRSSGEITFIHTAMYIVTKLNIAMSDFPTSCSPKFQHVRHKSCYFLF
21. 2296-2394 MCVIKVVTFCFDRLCDDKNKPALTKATALCSVF
22. 2537-2620 MRYSSFAQKLNSNLWMEMVNDDRIYIFG
23. 2595-2633 MMTEFIFLVELSL
24. 2796-2828 MLTHLKHEVKH
25. 2993-3022 MKAKVDHLKS
26. 3320-3352 MILSQLVTLQF
27. 3313-3573 MPYDFKSTCYLTILSCQLCLNFKFSQLLPYDFKLSTFALIFCLNFFNLKLRQKLTQLKITAKIDNLKFNNFVLFDSLGRNSVLFANI
28. 3621-3659 MEIANDDRICIFG
29. 3634-3690 MMTEFVFLGELSLEHLLHC
30. 3810-3884 MILRHKLTTLNFRAIVDNLKFCGKS
31. 4416-4481 MILLEITLRNKGTGAVTRALPF
32. 4588-4650 MYLLKRYCPSESSCTFISESA
33. 4650-4730 MTMLIDTNAAYHTGLGCEVNISPFHQH
34. 5003-5056 MQLDSACNTYGPFGESSG
35. 5031-5192 MVLLEKAADETTHTLRCLAVDVFFFVVMKGTVRWIVQIEECLSYICQCSFYIIL

Variant Information


Variant PositionrsIDReferenceAlternate
60111791 rs180074816 C T

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: