Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001672

Transcript Name: lnc1_nup50
Type: lincRNA
Genomic Location: chr4:60108488-60110791
Nearest Gene: nup50 (NM_201580)


lnc1_nup50
Exons
6010848860110791




Expression Information

Negligible Expression across RNA-Seq datasets





Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 27-68 MNFHQSTLIDHKMM
2. 422-496 METTGEQKSGTCHNVDGRDTKNTEH
3. 664-705 MCTKSPHWYLKGTY
4. 527-712 MERTDINLASQSCVICCVCVNEHRHALSEIKVQELSLGQYLFKRYICVQRVHTGISKVHISA
5. 716-775 MYLNSTFKEPLWTNMYLLKR
6. 748-783 MDKYVPFKKVMP
7. 1015-1044 MQFCIVTSHF
8. 1104-1154 MLRQLLCLMFSTFALHL
9. 1121-1177 MPYVFNFCPTFVSCRMYAL
10. 1177-1212 MILSCQLVTLQF
11. 1170-1217 MHYDFKLSTCYLTILS
12. 1285-1329 MPYDFKLSQLIILRF
13. 2134-2172 MPYDFKLRQLVTL
14. 2141-2197 MILSYVNLLPYNFKLSTSP
15. 2228-2260 MILSGQLLPSF

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: