Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001670

Transcript Name: lnc3_ptprb
Type: lincRNA
Genomic Location: chr4:59767798-59769626
Nearest Gene: ptprb (NM_001199134)


lnc3_ptprb
Exons
5976779859769626




Expression Information

Negligible Expression across RNA-Seq datasets





Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 685-714 MDLKATSLLA
2. 1518-1571 MTEQVCGSCKCKGIKGEN
3. 1656-1694 MFCLRGKYSTGLV
4. 1707-1775 MLIFVIVLLNMLFIENLFTCRLI
5. 1763-1828 MSIDLSLLLFFILSLNKGCDWL

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: