Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001667

Transcript Name: lnc3_zgc:165515
Type: lincRNA
Genomic Location: chr4:59206892-59207169
Nearest Gene: zgc:165515 (NM_001099227)


lnc3_zgc:165515
Exons
5920689259207169



Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 1.49 0 1.49 1.31 1.7 1.01 1.84 0 2.03 0 1.88 2.01 2.62 1.13 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 85-123 MCRQSRSGTRSYH
2. 180-218 MAMSACPVHSVSQ

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Kaushik K, Leonard VE, Kv S, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V, Sivasubbu S
Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish.
Plos One(2013) 8(12):e83616
PMID: 24391796

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: