Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001663

Transcript Name: lnc_zgc:162958
Type: lincRNA
Genomic Location: chr4:58411719-58411995
Nearest Gene: zgc:162958 (NM_001089338)


lnc_zgc:162958
Exons
5841171958411995



Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 2.55 3.29 2.56 2.34 2.24 1.37 1.4 1.09 2.17 0 1.88 2.24 2.5 1.83 2.66



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 12-41 MSKPLKSLPT
2. 54-92 MRSDTCVTFHVRL
3. 82-156 MCVCKCEAKLNVSLHLPQSNELPSE
4. 237-275 MPFQMTLQIFPMC

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Kaushik K, Leonard VE, Kv S, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V, Sivasubbu S
Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish.
Plos One(2013) 8(12):e83616
PMID: 24391796

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: