Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001659

Transcript Name: lnc_zgc:174944
Type: lincRNA
Genomic Location: chr4:56018979-56059336
Nearest Gene: zgc:174944 (NM_001114585)


lnc_zgc:174944
Exons
5601897956059336




Expression Information

Negligible Expression across RNA-Seq datasets





Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 73-144 MGKSQCQSSKKTISSAQCFDIVCN
2. 440-637 MYCRNRFSVLTLMSSSFIVSHCRTEQNASCAIFFSWALPACGSACRVLCRLYHCHISRNVKDLKRP
3. 358-708 MKCCQHDIYFLIKSHLKEINKTYLFVENVLPEPLQCLDADVLLLHRQPLPHRAERLLCHLLFLGTTSLWIRLQGLVQAVPLPHLQEREGSEAALTVDGPVDVDLEVAGNLWKQLHIL
4. 647-958 MALSTLTSRWQETCGNSCTYCNRRSFIYSPGPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYIATYKGDILFISKVCFYIYNETSVYTELSNRCDRRK
5. 909-1007 MKHLCILSYQTDAIVENNTKAKLFQVLCSQICI
6. 943-1011 MRSSKIIQKLNFFRFCAAKYAFK
7. 1179-1307 MGERLTAQRHTHRQNTAHTVKYIKRDVSKTYCLSEQDKNNLPL
8. 1333-1425 MTAQPHTHRQNAAQRVKYFQRDVTKTYCASI
9. 1462-1512 MTGVLFEGAASRILHKE
10. 1603-1641 MNLSRQQMNSLTR
11. 1821-1859 MSANSPNVGISTA
12. 1840-1869 MWESRRHNFW
13. 2633-2665 MSFEHCAGRLT
14. 2825-2995 MEEKKERTGGSPPPIEGLLSPDRVRPVESMCWQPQLMTKHEASIWRKLKLFMRCHSY
15. 3076-3237 MLGGWASPPWSTADRKRRLPFAPPGNSYLPGRGDTMIKKVVHPGRGLAITLRPR
16. 3259-3288 MWESRLHNFW
17. 3924-3956 MSFEHCAGRLT
18. 4116-4286 MEEKKERTGGSPPPIEGLLSPDRVRPVESMCWQPQLMTKHEASIWRKLKLFMRCHSY
19. 4367-4528 MLGGWASPPWSTTDRKRRPPFAPPGNSYLPGRGDTMIKKVVHPGRGLAIALRPR
20. 4550-4579 MWESRRHNFW
21. 5296-5355 MSPFVTFEAPEFWAFLHHIF
22. 5448-5534 MVRRPSLPEICFLQTLFHLLCLCQDTIFF
23. 5399-5599 MTLKCCGASAVSILVLYGKETISSGNLFFTNLVPSSMFVPGYNLLLILDMGKTPHLSSLLKISSFAR
24. 5611-5766 MLERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSLLLKKAALHAGY
25. 5840-5944 MENVTQTVVLGGTGHRVAVRICRFFFVCQPRKMNF
26. 5970-6068 MFSVVGSCTLPSNGWKGGHSCCLLFVCATKPRG
27. 6007-6081 MGGKVDILVAFYLCVQLSLEGNHRL
28. 6186-6248 MITPTPPINTENKKLTKLLKH
29. 6403-6453 MWAYIHIQYTYMHLHTS
30. 6381-6530 MFNIYCTHVGIYTYTVHIHALTYVVTHLKHPKSFQTPCCMSLYSTFYHEV
31. 6821-6916 MSIPPSRECTFAFSVFKTMVDPLVFGPIHGDQ
32. 6942-6980 MGFLCHLEKKKTI
33. 7051-7131 MNLRPLHCTTLKNKITTISVFGLVFLV
34. 7180-7302 MTENYNVWAFRKHCKRTYHDTNLHSIMQQYLHTKTNQNLLG
35. 7196-7405 MCGRLENTAKGHIMIQIFILSCSNICIPKQIKTYLGKTLCLSHPLPLHSKIALCQHDHHNPEVEMEFHSL
36. 7362-7427 MTIIIQRWRWNFTHCKGTNQNM
37. 7434-7466 MNLKKQQNNSN
38. 7508-7612 MKVHNHSTWTVSTGHTGVHVVQITQSFKVQIRLHD
39. 7608-7682 MIRSPLGKDSPSVASIIRTTLPTAV
40. 7878-7961 MIIEVVQTILPFLVSVYVIAFMAQLVVG
41. 8038-8070 MQVTLQYLLKQ
42. 8103-8285 MRLSLPDKLSKQGHSKLPCIVCIQPPQAQDVLEKHALIFAGCLVGVSLEFSYVQACLPSFF
43. 8257-8310 MFKHVFHHFFDCSRVRGI
44. 8225-8317 MSCWSFTGIFLCSSMSSIIFLTVAELGGYES
45. 8317-8361 MTAGIIIFMNSVGNF
46. 8310-8369 MNHDSRHHHLHEQCWKLLNT
47. 8407-8562 MPLCCGFVNTGLTRLGTRTMPVIFLFIISHHDPSHSTVIGHCWFKHRNETFC
48. 8584-8631 MERQRCLRNICFPLQL
49. 8549-8680 MKHFVDELPTVTWKDKGVSATFASRCNFNSWIFLASPNHFSCTS
50. 8783-8881 MCAYSAFEMHWSSSHAERKFGPHVFFITCMGIA
51. 8866-9006 MYGYCLTMKCLFNSKNANFSIDALRSQVLLRSHCIYSVSMLSLNVSS
52. 8742-9122 MTVHGSTQMVRSQLCVRIQHLKCIGQVHMLNESLGPMYFLLHVWVLLDHEMPFQQQKCQFFHRCTEISSASQESLHLLCQYVVFECEFVDFWPEVLHYIGCKWQSSLLTILGVTAKGGQKVTEPVSA
53. 9129-9179 MSSGAVSAGQMTDTVPA
54. 9186-9236 MSPGAVSAGQMTEAVPA
55. 9243-9293 MSPGAVSAGQMTEAVPA
56. 9300-9350 MSPGAVSAGQMTEAVPA
57. 9357-9407 MSPGAVSAGQMTEAVPA
58. 9414-9497 MSSGAVSAGQMTEAVPAWQRSPVAVSAG
59. 9464-9508 MAEVTCGCVCWVDDD
60. 9602-9646 MWFSIFSRVNTITEQ
61. 9504-9701 MTEVVNPGQMMTQAWSAAQLMSEDGLKRHAVWQCGLVYFPELTQSLNNSSSESGIFFYILNHILQW
62. 9698-9739 MVKSEIEKKNKHIF
63. 9842-9955 MKHDGSRYVENKVCLSLNIKIIMITNKNAKENTLCNIG
64. 9924-9971 MQKKIHFAILASLTSN
65. 10078-10197 MSRMGTCHCSFLNTARIRPCIARFYAYLQGEMALKRAVGL
66. 10151-10234 MHICKGKWLLKEPLGYEVRIKENTNKKL
67. 10352-10459 MTGICKQKVAQINRLGIKRFILHIFSSNIIRVTYVN
68. 10478-10537 MDLIHRRNPKQIYILFISFL
69. 10562-10663 MDCIYQTEVKLILYSHIRLATTDDTVLILFATLF
70. 10629-10676 MTQSLYCLPRCFEYSV
71. 10717-10782 MIAGSAEMTSDYNLKTTLALFN
72. 11010-11042 MNKGFKLNNYT
73. 11094-11129 MKTGNESIRYVN
74. 11173-11253 MGGAAYAAPPHIQPRPNLRAADRGFSN
75. 11256-11318 MTKHEASIWRKLKPFMRCHSY
76. 11147-11503 MFSPAHYFLWAGLHMQPRPIFSPAPICGLQTGASPTDDKTRSKHLEEAQTLHALPQLLASGLQAQARLLQVQRLRRQGLLAHSPRSVAGHHRPGVRPIENGGCHLRRPATHTYLAGEIP
77. 11503-11559 MIKKVVHPGRGLAIALRPR
78. 11581-11610 MWESRLHNFW
79. 12246-12278 MSFEHCAGRLT
80. 12438-12608 MEEKKERTGGSPPPIEGLLSPDRVRPVESMCWQPQLMTKHEASIWRKLKPFMRCHSY
81. 12794-12850 MIKKVVHPGRGLAIALRPR
82. 12872-12901 MWESRLHNFW
83. 13550-13582 MSFEHCADRLT
84. 13742-13912 MEEKKERTGGSPPAIEGLLSPDRVRPVESMCWQPQLMTKHEASIWRKLKPFMRCHSY
85. 14098-14154 MIKKVVHPGRGLAIALRPR
86. 14176-14205 MWESRLHNFW
87. 14854-14886 MSFEHCADRLT
88. 15046-15216 MEEKKERTGGSPPPIEGLLSPDRVRPVESMCWQPQVMTKHEASIWRKLKPFMRCHSY
89. 15402-15509 MIKKVVHPGRGLAIALRPRWPLRIPQMWESRLYNFW
90. 16160-16192 MSFEHCADRLT
91. 16352-16399 MEEKKERTGGSPPLPP
92. 16444-16527 MCWQPQLMTKHEASIWRKLKPFMRCHSY
93. 16713-16769 MIKKVVHPGRGLAIALRPR
94. 16791-16820 MWESRLHNFW
95. 17470-17502 MSFEHCADRLT
96. 17662-17832 MEEKKERTGGSPPPIEGLLSPDRVRPVESMCWQPQLMTKHEASIWRKLKPFMRCHSY
97. 18018-18074 MIKKVVHPGRGLAIALRPR
98. 18096-18125 MWESRLHNFW
99. 18875-18907 MSFEHCADRLT
100. 19067-19237 MEEKKERTGGSPPPIEGLLSPDRVRPVKSMCWQPQLMTKHEASIWRKLKPFMRCHSY
101. 19317-19478 MLGGWASPPWSTADRKRRLPFAPPGNSYLPGKGDTMIKKVVHPGRGLAIALRPR
102. 19500-19529 MWESRLHNFW
103. 20164-20196 MSFEHCADRLT
104. 20356-20526 MEEKKERTGGSPPPIEGLLSPDRVRPVESMCWQPQLMTKHEASIWRKLKPFMRCHSY
105. 20607-20648 MLGGWGITALEYDR
106. 20714-20770 MIKKVVHPGRGLAIALRPR
107. 20792-20821 MWESRRHNFW
108. 21469-21501 MSFEHCADRLT
109. 21661-21804 MEEKKERTGGSPDRVRPVESMCWQPQLMTKHEASIWRKLKPFMRCHSY
110. 21990-22046 MIKKVVHPGRGLAIALRPR
111. 22068-22097 MWESRLHNFW
112. 22747-22779 MSFEHCADRLT
113. 22939-23109 MEEKKERTGGSPPAIEGLLSPDRVRPVESMCWQPQLMTKHEASIWRKLKPFMRCHSY
114. 23295-23351 MIKKVVHPGRGLAIALRPR
115. 23373-23402 MWESRLHNFW
116. 24052-24084 MSFEHCADRLT
117. 24244-24291 MEEKKERTGGSPPLPP
118. 24336-24419 MCWQPQLMTKHEASIWRKLKPFMRCHSY
119. 24605-24661 MIKKVVHPGRGLAIALRPR
120. 24683-24712 MWESRLHNFW
121. 25362-25394 MSFEHCADRLT
122. 25554-25697 MEEKKERTGGSPDRVRPVESMCWQPQLMTKHEASIWRKLKPFMRCHSY
123. 25900-25932 MSFEHCADRLT
124. 26092-26139 MEEKKERTGGSPPLPP
125. 26184-26267 MCWQPQLMTKHKASIWRKLKLFMRCHSY
126. 26348-26509 MLGGWASPPWSTADRKRRLPFAPPGNSYLPGRGDTMIKKVVHPGRGLAIALRPR
127. 26531-26560 MWESRLHNFW
128. 26820-26927 MLSSLERRFPLFLVLCQASFAPVELRAPVEGLPTRR
129. 26744-26992 MSLGVGLGAGLVYALKQLTGGGATAHAFLAGAALPSLPRPLPSLFCSSRAARACGRPAHPSLEESVQTPKTTRKVPPQSGLTR
130. 27404-27436 MSFEHCADRLT
131. 27596-27637 MEEKKERTGGSPPP
132. 27682-27765 MCWQPQLMTKHEASIWRKLKPFMRCHSY
133. 27951-28007 MIKKVVHPGRGLAIALRPR
134. 28029-28058 MWESRLHNFW
135. 28708-28740 MSFEHCADRLT
136. 28900-29070 MEEKKERTGGSPPPIEGLLSPDRVRPVESMCWQPQLMTKHEASIWRKLKPFMRCHSY
137. 29256-29312 MIKKVVHPGRGLAIALRPR
138. 29334-29363 MWESRLHNFW
139. 30013-30045 MSFEHCADRLT
140. 30205-30252 MEEKKERTGGSPPLPP
141. 30297-30380 MCWQPQLMTKHKASIWRKLKLFMRCHSY
142. 30266-30622 MPRSSASGGIHVLAAPTDDKTQSKHLEEAQTLHALPQLLASGLQAQARLLQVQRRQETGVAGPFPMLGGWASPPWSTADRKRRLPFAPPGNSYLPGRGDTMIKKVVHPGQGLAIALRPR
143. 30644-30673 MWESRLHNFW
144. 30788-30823 MSLENCIHTSLQ
145. 30922-30957 MPPPSSYTRHAQ
146. 30858-31046 MAKKAFLQDSQSSSRLFGFIFNASSFILHQTCSIMFISGDWAGQSWSTLTFFAFRSFGVEAEV
147. 31140-31181 MLPSTLQISCTPPY
148. 31046-31345 MRRSAILLENSPSPVVCNVMGSTNVLISQAVDVAIHSADFLHAPILNVTPNHDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFLVLCKPLLLQ
149. 31200-31442 MMFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSSASLFCSSRAARACGRPAHPSLEESVLTPKTTRRSPLKAV
150. 31514-31600 MSEFYFYRPAAVTDGTNADRVKGHHFICH
151. 31864-31896 MSFEHCADRLT
152. 32056-32103 MEEKKERTGGSPPLPP
153. 32148-32231 MCWQPQLMTKHKASIWRKLKLFMRCHSY
154. 32312-32473 MLGGWASPPWSTADRKRRLPFAPPDNSYLPGRGDTMIKKVVHPGRGLAIALRPR
155. 32486-32521 MAIDLYGVQISF
156. 32525-32554 MCRQLQHLIG
157. 32575-32703 MNELILRVNNPLVMSSKPIVVTVRTRCIWCGAFEIKANNPNCA
158. 32915-33013 MFSRIILKYVCITKKWKHFASVLLYYTDIPSYF
159. 32959-33135 METFCFCSIILYRYTIIFLIAVIQLHKMNNNPLLCYWVSILIIVTNYFVTNYNSSILRV
160. 33199-33255 MLECGLRMNPVASHLTATG
161. 33156-33305 MMYCFCICVLQVELDVGMWFKDESSGIPSDGNRISCHRLQSWTWKNTEEQ
162. 33432-33515 MKSFQHIENETRDCILLSKFIKSAKEKF
163. 33457-33537 MKHEIVFYYPNLLKVQKKSSKHIVRPA
164. 34202-34300 MYTLKQSTVNIANICATISVKNSQQISANRKNL
165. 34466-34549 MNRNMDRGPVRQTRRPETESPRERPQPF
166. 34701-34745 MSRATEFCLFPLVDC
167. 34848-34895 MGRRRNWLSKSRGRDR
168. 34775-34948 MPAARKQREVQSAECVCAGVLRVSNGPAQELVEQEQREGQVRFAGAFALTFGCRPEKW
169. 34951-35040 MGYCTAGRLVWGLSSGSSSAGGWLVLETLW
170. 34980-35084 MGSFLWKLLSGGLAGAGDALVTTEDRQTLVGDVCG
171. 35107-35166 MNSLTHFEFIFRMGIPSLLS
172. 35265-35333 MKPQLFDQAVHQPVLSGVHQVCG
173. 35463-35516 MEVKLVPGADDLLPGRLI
174. 35452-35595 MLRSWRSSLFQALMTFCPVDSFKASFPSSRAISTRTLHRSSTCWYPGR
175. 35595-35705 MIGTAHVLHTGVKLSSHCLIGEAQTVPQRSQAVPLAV
176. 35967-36026 MDQRRHVHHMFPPFPPLDAG
177. 35881-36069 MRSSPAGTGGLYFASSTSPNSSWHLWFRRWTRGDMYTICFLPFRPWTLADSLLEFQRAMPANR
178. 36211-36411 MVYMFLPGGSWMHSRCFCWFSQTWSMAAESLNRCTWFSSIPAAPFRRSMAHCTRTHVSCALTVILLT
179. 36129-36599 MKALQTVASSHRTVPRKTNTVTGHILGDGVHVPPWWILDAFKVLLLVLPDVVDGCRVLKQMHLVLIHPCGSLQEINGALHAHTCFLCTNCDPPDVMAEVIFTDTQLDDLAVSQGGIVGWVTGTYRLYQKSHVIFVVGKDGSREGRLEQGILWMMICP
180. 36618-36809 MDPMKDVQPYQHAPVRPVTEELLNRGHGVDATAATIHIHELGRCLVSSPVPLHEAFSHRPHLLQ
181. 36634-36918 MSSRTSMPLSVQSLKSCSTEDTAWMRQQPRSTYMSSGGASSALLYLSMRPSAIGLIFSNDSSQVRTDMRICPCSLATLVHHSAVPFPSPESFLQI
182. 36976-37017 MHQTKKVIVTNIQK
183. 37124-37174 MINNLVRVMLTNRILKH
184. 37265-37324 MIKMSHDAKVDNNILRIKSL
185. 37479-37610 MLSASEIRNAFLISLADGGSLHAGGRWNCWHKLPKSRENRHFAA
186. 37528-37617 MAALSMLVVAGTAGTNSLKAEKTDTLLLNL
187. 37701-37760 MGFFKTLNKIFRKMSETCNH
188. 37808-37873 MVTGFRLSSEYLLLSLTKERNS
189. 38051-38119 MVFPSVRSLIRRITCLSTPRLES
190. 38187-38246 MICILLETHRSVKTAGNTAL
191. 38306-38410 MLFRLLCSLSTGVACQDLSQHGVPARHVADLSYRG
192. 38367-38426 MEYQPDMWQICLTVDEYPQR
193. 38347-38529 MPGPQSAWSTSQTCGRSVLPWMNTHNGREKPSDWCVLGSQTLGTEDCNATHQLVSRKKTEL
194. 38640-38765 MFVFIRHSPLKESPFSILLKPQYVCTGQPMKTRLPHLVPTLK
195. 38871-38927 MSTVVIIRTQCLCVTTFIY
196. 39003-39032 MERGLVQAHF
197. 38930-39079 MHTVKAVIISPPVKFEFIFHNYLCNGERTCSGTFLNNSSNNLISYNLSLP
198. 39079-39126 MMTVYNIGSHFTIRFH
199. 39158-39214 MNNACTTFLIIVQHVLMLY
200. 39133-39219 MYLLTCTNYEQCLYNIFNHSSTCTNALLK
201. 39240-39317 MDCELAWMTVTRTNTVLSVLFIACLW
202. 39257-39355 MDDCNTNKYCIKCIVHCLFMVVNALTLTNTNLL
203. 39430-39477 MNKKFNTLITVLIYLC
204. 39480-39575 MMLFKLNNVSSIMHCATSTTLDFNNALMLNCN
205. 39867-39917 MLISDIHYVIYLVFQRS
206. 39982-40053 MGKSQCQSSKKTISSAQCFDIVCN
207. 40267-40356 MKCCQHDIYFLIKSHLKEINKTYLFVENVL

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: