Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001657

Transcript Name: edal26
Type: lincRNA
Genomic Location: chr4:54123703-54125698
Nearest Gene: zgc:173619 (NM_001109740)


edal26
Exons
5412370354125698




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0 0 0.82 0.79 0.21 -1.05 -0.84 0 0 0 0 0 0 0 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 140-196 MTYMVKHMKDHSSRWMVLL
2. 181-228 MDGFALIFIYPIFEYI
3. 268-318 MSVNTLEVINVVKLFKI
4. 1049-1120 MINFTIYNANHTVMPLGGQKQASF
5. 1189-1266 MNLFSCRKKSIKNVCFNVSTQVHFAK
6. 1226-1288 MFVLMCLLKCILPNNTPTHIY
7. 1642-1701 MYLYNKDIQMGYQLNVLLNK
8. 1767-1808 MNLFYNSLIYQMFQ
9. 1811-1993 MLDNKTYTCFRTSRSEQKRERSTEGSKIFFKMIGGETVDQYVVLLPHSKKVAGSNLGSVGV

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: