Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001656

Transcript Name: lnc_zgc:173619
Type: lincRNA
Genomic Location: chr4:54123500-54124440
Nearest Gene: zgc:173619 (NM_001109740)


lnc_zgc:173619
Exons
5412350054124440




Expression Information

Negligible Expression across RNA-Seq datasets





Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 22-90 MEEELANPYKRIRTAKILNQDEE
2. 83-127 MKNRTRLELKKKKEH
3. 179-217 MLPHRLVWYSSSY
4. 237-428 MNHWQFIIITQIIPVCYLSDNESDYGVILSSHVSNWFNTLRARTTVSIQSFNSNCTNNVFLYFK
5. 409-507 MFFYILNSFTTLITSKVLTLIHFEFRSIYLLKL
6. 566-598 MIFHVFDHISH
7. 723-752 MVPNLYVFSP
8. 752-799 MRFPSTFIYLTIKHLF
9. 739-843 MSFPHEVSLYLYIFDNKTFILKKKAGDFLEFCTVH

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: