Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001653

Transcript Name: lnc_zgc:173720
Type: lincRNA
Genomic Location: chr4:46968042-46969836
Nearest Gene: zgc:173720 (NM_001113606)


lnc_zgc:173720
Exons
4696804246969836




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0.77 -0.36 1.68 1.78 1.37 0.9 0.91 0.4 0.75 0 0.78 1.36 0 0.4 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 173-208 MVHFLLIFIYSF
2. 295-333 MCNCNTHDIFILS
3. 314-394 MTSSYSPEQRLSPATATLKTFCSAKSL
4. 397-471 MNSVLILLLLLLHKNILLHEKKKKS
5. 452-550 MKKKKKVNGTIFPLCFICSGQCIHNATLKIGNY
6. 659-712 MQAFIEQCCSIDFRYFFR
7. 776-829 MNGSGLDPDKLLHQWVRV
8. 817-849 MGSGLDWIRAG
9. 891-983 MSYSISGSGLDPSWMSYSINGSGSVPDEELY
10. 949-996 MGPDRFRMKSFISGYG
11. 1008-1115 MGPERIQNSYPFRIRCAVQVDSSTDPFADPFLLRIM
12. 1349-1381 MCYVILLKFIS
13. 1546-1587 MHKLGFRSDAFTCV
14. 1591-1620 MEVYGGKSPV
15. 1587-1631 MNGSLWGEKSSVTAA
16. 1601-1645 MGGKVQCDRSLSASE
17. 1671-1715 MCKLKDDDRLKLFPH
18. 1729-1764 MVSLQCGYSCVY
19. 1755-1793 MCLLKFDDWLKLF

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: