Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001651

Transcript Name: lnc_LOC100008037
Type: lincRNA
Genomic Location: chr4:45204254-45206439
Nearest Gene: LOC100008037 (NM_001128300)


lnc_LOC100008037
Exons
4520425445206439




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0.04 0 1.28 1.51 1.31 1.36 0.48 0.33 0.34 0 0.82 0.49 0.46 0.86 1.08



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 85-120 MCVHCEVSVFVR
2. 153-209 MGHSRHLCCIRVNVSCYGL
3. 295-354 MITTTDILNFPLGRKYIDRL
4. 370-498 MHRVSWPAALRRKIYLHFSVYALNIITKVSTNDYLSNFTTVIA
5. 639-671 MYSLPDKKVHF
6. 777-839 MTKLKFNIQFRFLMLNVSYFS
7. 823-855 MCHIFHKLVAL
8. 944-1159 MTQTEQHLYIWATQKLHRQTLQDKLRGGKENQHCSQLKMWTTNMLRRRHLRLKMVRDTDEKTHNTKEVAETN
9. 1176-1229 MDMRRSKPPVGGELTAAV
10. 1256-1357 MDFVIRMMLKYQTVKKTKKKNKKKNKILITSTEP
11. 1249-1440 MSDGFCNKNDAKVPNSKKNKKKKQKKKQNLNNKHRAINMILPCEGEDVTLQHRILTVKQANVHL
12. 1460-1489 MSIRVKSPGV
13. 1589-1636 MFHPVLCKPYEAFLQK
14. 1617-1655 MRHSSRNDFSLSA
15. 1707-1745 MCCELIYCFCSSQ
16. 2034-2099 MEVSSYRFSAFIIISVFVFNIS
17. 2140-2172 MLFSMHSMYLT
18. 2124-2183 MFILFNVVLYALNVFDLIKL

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: