Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001650

Transcript Name: edal23
Type: lincRNA
Genomic Location: chr4:44322377-44323082
Nearest Gene: LOC100008037 (NM_001128300)


edal23
Exons
4432237744323082





Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0 0 1.05 1.24 1.16 0 0 0 0.14 0 0 0 0 0 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 172-285 MYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIR
2. 152-328 MKKKKKICIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYILGEAPIHSNTTAYLVY
3. 386-436 MPTDPALGHDGFASAAI
4. 436-498 MSVWVFHRFLGVFIIYLPSSC
5. 411-530 MMDSPLLLYECMGVSPIFGCIHNLLTLKLLINFLISGHHK
6. 541-573 MDKENHPPYTK
7. 573-605 MMFSPTLKQKF
8. 628-657 MPDQITTYLV
9. 624-674 MYARPNNNLPSLAMEKR

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: