Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001647

Transcript Name: lnc1_si:dkeyp-4c4.1
Type: lincRNA
Genomic Location: chr4:41189269-41190966
Nearest Gene: si:dkeyp-4c4.1 (NM_001100956)


lnc1_si:dkeyp-4c4.1
Exons
4118926941190966






Expression Information

Negligible Expression across RNA-Seq datasets





Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 116-202 MSGPCKPFTFTSRELYFLSLTCLLLFFFS
2. 281-391 MWNYSLVSMLKLHITLPRTLKFQPYYCAVSGCRLLFF
3. 523-606 MLSLCCFNNVQILFICLHLYILEVVYFL
4. 548-622 MFRFCSFVCTCIYWKLFIFFSVVII
5. 730-783 MLFKLNKSVNTDTVLGYN
6. 820-927 MQSLKTENTLHYLKQMKLFQISTTLFPLHLKSDVIV
7. 943-1014 MKITGKNNLMIKLQFFSCHFPFSM
8. 1227-1313 MSDIIYKDRPAYRIIFRVYEHEWQLLFLI
9. 1292-1339 MAAVVFDLTAAKLAWL
10. 1519-1581 MWNYSLVSTLKLLLTLPSTHL

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: