Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001646

Transcript Name: edal22
Type: lincRNA
Genomic Location: chr4:38291372-38291932
Nearest Gene: zgc:174708 (NM_001114900)


edal22
Exons
3829137238291932




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 1.2 0 1.99 1.56 0 0.42 0 0.29 0.56 0 0.87 0 0 0 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 139-201 MWNYSLVSTLKLRLTLPYTHL
2. 336-419 MLSLCCLINVQILFICLHLYVLEVVYFL
3. 361-435 MFRFCSFVCTCMYWKLFIFFSVVIT
4. 506-559 MTQSHKVLFQWIHIMLFK

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: