Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001643

Transcript Name: lnc2_zgc:174690
Type: lincRNA
Genomic Location: chr4:36802990-36812033
Nearest Gene: zgc:174690 (NM_001135989)


lnc2_zgc:174690
Exons
3680299036812033




Expression Information

Negligible Expression across RNA-Seq datasets





Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 86-139 MQCKFGIRRQANQMSDII
2. 203-274 MKNTHTHTHTYIKIDYQLIGCPAI
3. 262-324 MSCNLIGILTEWHNKHLFTGS
4. 437-520 MTSRIDLKILKKQITWHTDKAISFISHI
5. 569-601 MHLNNSPLQRY
6. 724-762 MFFMHVWPGPVLY
7. 672-776 MSTDDPLTFNHIIITYYHVFHACVAGARTVLNITK
8. 737-829 MCGRGPYCTEYNQIEVHFTTHNFRFSPNKWK
9. 823-861 MEIKQRCVQTIFY
10. 840-869 MCTNNLLLDT
11. 1034-1078 MPHSSATKPSKQNTH
12. 940-1092 MVCIMVVSGHCSHTQYYTGYTIGKDQKEKEENATLQCNETFKTKHSLIKRN
13. 1554-1661 MFLDKTFTDSQIETYPQPSQLALNANGEQSTNHTWM
14. 1630-1665 MVSNPPIIHGCS
15. 1655-1684 MDVAKRIIYY
16. 1753-1800 MRLHFRRPKTQNYRFF
17. 1832-1939 MLNAHQKFARTQHTATIPCQGDNGSKTSTLLKGWRA
18. 2084-2131 MILLTTMDGKDYSEPD
19. 2169-2216 MYMLNDYCSPWQMMRV
20. 2141-2239 MRHPPPLYLDVHVERLLQPLANDAGLNVFRQWP
21. 2220-2357 MFSGSGPSSSSPIALCCFPWGINSRERSLCTHQPFLLQWWLYLDYT
22. 2333-2371 MVALPRLHLRQKG
23. 2566-2610 MVYTPPLPIGDWTTL
24. 2517-2786 MGPMHLLHPRGIISLYYGVYTTLTYRGLDHFVNSAGPMILNFMTTTNTLVKQINFLAFLQCRLLSYLTMAFPTKFCGSIQPSPHSAIRFF
25. 2696-2830 MQTPFLPDHGVSYEVLRLYSAEPSLCYTFLLGSLYAHPPNLLPAH
26. 2799-2975 MLIHPIFYLPTDRCIHSCEQEINWKSRNLPKHQEIRRLTSSLVRRCIIGKTYLCDMASP
27. 2975-3028 MTSFVPQTMYVISHEGFD
28. 3015-3146 MKGSIKTLALPISLRVIWNSASLLNPIQLTKLRDHCTLKISTLI
29. 3065-3202 MEQCESSEPHTTDKAERPLHPQNFDLDLSESAQVPQTYKTTRGSRC
30. 3282-3347 MFSPITSPLQCSKINCQDLIWS
31. 3507-3602 MTMRAMQLLKNLCLQNLREQQLIYFLPPTRQF
32. 3837-3887 MQKFYQHCRQSGATIVL
33. 3805-3909 MVFCANTTGSLCRSSTNTAGKVVPQSFCEDGSAVY
34. 3893-3937 MVALYTDGTRHLHYR
35. 4118-4186 MPIAPISWSYSFAYFFLWDEAPG
36. 4251-4379 MTRINFQHKREREICISQYRSSHQSLLQILKAQFTILGPTTFN
37. 4596-4640 MPQVTYFLLEKATFL
38. 4934-5098 MWKTIGLHSGHPVILQFVAEGKHPSASYHSTAYSQHKDESAHLFSAQSQLERHTG
39. 5233-5262 MSSVQPKSPS
40. 5142-5267 MLLNCLIIRRGQASISLPYWLTIKQRNLMSYELSTTQITLMS
41. 5353-5403 MASSTVSPLTICNAVVA
42. 5390-5434 MQLLLEDGPVPLVES
43. 5349-5441 MDGLLHCVPSHHLQCSCCLKMGLFLWWSHNI
44. 5471-5521 MSLLLHAAATGNPVPPH
45. 5487-5561 MRLQQGILFPHINYGYKSHTPNNWY
46. 5527-5838 MGTKATPRTIGTKDTEASRPAGSEFSIPSGSKSNKGEGPMGKENVTGTKRNESAGIRTASRPPTLANLSVISQLSVSVSLQYCKAEYHAGTSRTVGRSKRLEPC
47. 5835-5906 MLTKQLPKTLLNDIHAQQPRKPTW
48. 5869-5988 MTFMPNSPGNPPGKELGRSFTTSTPLFWMFFPRTTKSNSR
49. 6115-6279 MDPVSSKHGTSTPPIVIVTEGQLPTNLQSACFPFNSEGCEPVATPPEVWLNNSGG
50. 6436-6480 MDYLHAGTAAAAGLE
51. 6386-6511 MPWLVTASADNRVHPPRWITCMLGLQLLQALSEPIKLLLLGL
52. 6562-6594 MVDHVLEPYTG
53. 6572-6733 MSLNPILGSKGGDRMTSFTRIRTKSLINPPNCLLPYIQNSGLWMEPNITLKLTT
54. 6922-6990 MHIHITLLTLKTPFLDPLSQPLV
55. 7025-7060 MIKDKKGFFPCW
56. 7182-7274 MGLEASDTPEAWALVSTTELALTEGLAAELA
57. 7214-7282 MGIGINNRTSTHRRPGCRVSLML
58. 7529-7582 MKRNNKKRSQQTHKVPKD
59. 7713-7751 MEIKQRCVQTIFY
60. 7730-7759 MCTNNLLLDT
61. 7924-7968 MPHSSATKPSKQNTH
62. 7830-7982 MVCIMVVSGHCSHTQYYTGYTIGKDQKEKEENATLQCNETFKTKHSLIKRN
63. 8446-8553 MFLDKTFTDSQIETYPQPSQLALNANGEQSTNHTWM
64. 8522-8557 MVSNPPIIHGCS
65. 8547-8576 MDVAKRIIYY
66. 8645-8692 MRLHFRRPKTQNYRFF
67. 8724-8831 MLNAHQKFARTQHTATIPCQGDNGSKTSTLLKGWRA

Variant Information


Variant PositionrsIDReferenceAlternate
36811581 rs180037046 T C

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: