Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001638

Transcript Name: lnc_LOC560232
Type: lincRNA
Genomic Location: chr4:29035804-29036278
Nearest Gene: LOC560232 (NM_001123254)


lnc_LOC560232
Exons
2903580429036278



Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0 0 0.15 0 0.44 -0.02 0.54 0.44 1.23 0 2.11 2.37 0 1.82 1.84



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 218-301 MSNWRERNSNSRTDHYVQTNTLHCTPFL
2. 301-333 MMLLYDTDIDT
3. 402-473 MILKSVWMIRIRLFLFHFCHLSVV

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Kaushik K, Leonard VE, Kv S, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V, Sivasubbu S
Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish.
Plos One(2013) 8(12):e83616
PMID: 24391796

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: