Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001636

Transcript Name: lnc2_si:dkey-13e3.1
Type: lincRNA
Genomic Location: chr4:28564924-28567167
Nearest Gene: si:dkey-13e3.1 (NM_001113341)


lnc2_si:dkey-13e3.1
Exons
2856492428567167





Expression Information

Negligible Expression across RNA-Seq datasets





Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 56-103 MVSHTFICMFFSYKYL
2. 194-247 MVCLQGCYGNGEPQECHY
3. 138-257 MIHLKLYLNIMSGEWVGPGWFVYRVAMVTVNRRSVITRAP
4. 338-382 MLLKCVYKFSEVTCS
5. 430-573 MKTAVSGRLCYMITAKLTKGLHHAEILCKRYVFVFKLLKTIIISLLIV
6. 747-797 MLICKAFKGRVCNVSIL
7. 1006-1062 MLVNLSNFKACQAHLFNSF
8. 1212-1262 MTFFICTASELLSSILL
9. 1289-1327 MYSILCSELDYCT
10. 1485-1523 MNILIVYLRIKFL
11. 1533-1592 MDPFHKKVMMCLMVISILNL
12. 1628-1711 MSTVRQNTKKKKDCLCQVFLMQCLWAGQ
13. 1672-1899 MSGVSNAVPMGRTVNLMLFSPLVAIISLTQLLLLLFFFAFSESIDNTITEFSFGYWSKIKCKHFVVFCHKYDYFCY
14. 1883-1936 MITSATKQPRIVKRVHRT
15. 2046-2117 MVKKVKRQRWWAPRKGQNSEGTYF
16. 2072-2173 MVGAKEGPKLRRDLLLINFLELKNCVFFCVFIHV

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: