Predicted ORFs


Transcript Name: lnc1_si:dkey-13e3.1
Type: lincRNA
Genomic Location: chr4:28450578-28455031
Nearest Gene: si:dkey-13e3.1 (NM_001113341)


Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0 0 0.38 0.14 0.26 1.17 1.33 0 0.56 0 0 0 0.14 0 0

Mutant Information

ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected

Predicted Open Reading Frames


Variant Information

Variant PositionrsIDReferenceAlternate
28450603 rs41175346 A G
28450621 rs41028946 T C
28450635 rs40967977 G T
28450675 rs40693295 C A
28450675 rs41003826 C CAA
28450720 rs40906889 A G
28450738 rs40984930 A C
28450742 rs40739215 A T
28450783 rs41015750 A T
28450991 rs40932486 A C
28450999 rs40917415 A G
28451107 rs40981595 C T


lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: