Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001634

Transcript Name: rakt3
Type: lincRNA
Genomic Location: chr4:28447351-28450190
Nearest Gene: si:dkey-13e3.1 (NM_001113341)


rakt3
Exons
2844735128450190




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0 0 0.41 0.52 0.36 1.13 1.25 0.63 0.52 0 0 0.67 0 -0.11 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 130-273 MSAKLRELCKCLTERQSEVLRTSFKCCVFRGNYLGNMLTCTICSLKGP
2. 246-284 MYNMFIKRTIVHM
3. 545-601 MYYKFGFTDNATDGLCCIK
4. 607-771 MLERLSRNLHGCNSTQKDYKCTLQKKYDLGSLHCMTILFPKFKLLCNVTLYTMIV
5. 849-893 MKYYEQGRLTRPRSG
6. 859-933 MSRAGLQGLGRAEATGPTEGRPLIK
7. 953-1006 MMQETPFFFSLCFHMQIL
8. 985-1080 MLSHADIVKYLFWLVSVKKKTVRPLNCGSEWL
9. 1170-1211 MHHRTRNKLYLVFR
10. 1243-1299 MSVPFFSNNITKTLCIQIK
11. 1800-1859 MKISISKKLIAKKKTTFVSQ
12. 1769-1864 MQYKSNSGKLDENINKQKINSKEKNYFCEPIK
13. 1948-2007 MYPKYVKFQFNDIFFYVCLL
14. 1979-2068 MIYFSMCVCYRSDGQSCLGAVVALLAVDNA
15. 2064-2156 MHRGSSGRGLSLYKMQVCSVKRFYCGCGWLV
16. 2361-2393 MGTFHFVNLVV
17. 2398-2427 MARICSLLSV
18. 2454-2492 MIVTGVILRNAVT
19. 2482-2568 MLLPSWEQFLSAVCFFCYSHGMAAKYFQN
20. 2540-2584 MVWQQNTFKIKLECV
21. 2520-2591 MFLLLQPWYGSKILSKLSWNVYRT
22. 2578-2670 MCIEPSHISLEKKLPCDDICQTLNGKVRTFF
23. 2634-2693 MSNSKWESQNFFLISKMLLQ
24. 2764-2796 MFICSLHNTVR
25. 2760-2828 MHVYMQFTQYSTLVLLLPFSYIL
26. 2741-2839 MFCISLYACLYAVYTIQYVSVITTFFIHFVIQR

Variant Information


Variant PositionrsIDReferenceAlternate
28449997 rs40693297 G T
28450061 rs40876108 T C
28450078 rs41110617 A G
28450087 rs41075616 A T
28450136 rs41195959 G A
28450186 rs40893522 C CA

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: