Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001633

Transcript Name: edal21
Type: lincRNA
Genomic Location: chr4:28394563-28396525
Nearest Gene: si:dkey-13e3.1 (NM_001113341)


edal21
Exons
2839456328396525




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0.26 -0.44 1.67 1.08 0.87 0.68 0.68 -0.23 0.71 0.83 0 0 0.51 0 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 198-296 MVIYDPMHCMNSGYQICILLNIFIKSYTCTSTK
2. 281-319 MYKYKIKGWCECS
3. 455-523 MATRPARASYTGTSSCFYYSVIL
4. 726-797 MSTYVRAGHCFISSVQEEAQINMG
5. 1033-1122 MGNFAFHEKGLHTIYMSCLFSIFLLFSTAS
6. 1083-1142 MSFLYFSFVFNSILKGAQRF
7. 1052-1159 MKKVYIRYICHVFSLFFFCFQQHLKRSPKVLEPISC
8. 1216-1260 MISQWQFFKKKIGEM
9. 1323-1352 MFPLCTRSPC
10. 1349-1393 MLKIPCINFLQPDHF
11. 1465-1524 MLICQYFLLTFYSCSANIHQ
12. 1552-1668 MIYTSVYLNTKNRENYSISFYSLKTKLLQFSIKHQLYIH
13. 1673-1735 MQQFVPPLQTAVKMRACFHLH
14. 1761-1796 MQSYLLIVMLRH
15. 1799-1831 MAVVRSTSKHS

Variant Information


Variant PositionrsIDReferenceAlternate
28395013 rs40854703 A G
28395059 rs40941268 T C
28395132 rs41175348 T C
28395137 rs40936878 C T
28395188 rs40897637 A G
28395225 rs41144180 T C
28395306 rs40924333 G T

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: