Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001632

Transcript Name: lnc2_zgc:174697
Type: lincRNA
Genomic Location: chr4:27932749-27936084
Nearest Gene: zgc:174697 (NM_001114431)


lnc2_zgc:174697
Exons
2793274927936084




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0.64 -0.08 1.44 1.13 1.27 1.6 1.06 0.87 1.05 1.49 0.8 1 1.4 1 1.19



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 132-161 MLFQTKHFHM
2. 211-246 MLNIAPVTACDH
3. 267-296 MYFLAELKTM
4. 481-525 MFISPRRGCLVCKVL
5. 562-594 MSLIERNFVIK
6. 712-786 MLENKQPLPSIVGTKYYGSQFSSSI
7. 761-823 MEVSFLHLSNLKGNWFGTYGG
8. 890-952 MSYSHTSFLMWAYLCLKLINF
9. 961-1020 MVCKFCDFFFFLIHSCCFFC
10. 1031-1120 MRKASFTLQATHRGKVTSDHSFQQRACNFQ
11. 1181-1231 MAALRMLKLYANKERLS
12. 1209-1268 MQIKSDFLERQPMGTPVELM
13. 1412-1522 MNKYWTIDSHKGDHLESSSKRNSECGCGVRGRRCTMA
14. 1529-1741 MSDDFALLIGFLLALNITYLKEIQYTFHILQKDPENWWLCDSYSVNLQLNLKCLVDFAHPCSNLLIIMLFI
15. 1708-1815 MLKLIDNHVVHLTLRLSNSLYLIEIYFLKKRVSFVG
16. 1843-1977 MFFLFSHYTSYYTIADILLHTLYINSVCYNCCLTKNQQVRSLKKH
17. 1815-1991 MISNFIVSDYVFLVLALHFILHNSRHSVTHTLYQLCLLQLLFNKKSTSQKSQETLKCSS
18. 1982-2044 MQFLNSIKMNLFKCFFVYSTF
19. 2020-2064 MFFRLFNILKAYNNS
20. 2224-2328 MKCNARTRITTNIKVAYHQTHFLLFIKSKQQVTLD
21. 2234-2377 MREQESPLTLKLLIIKHIFSFSLRVSNKLHWIEISFTFWKMGRSCTIR
22. 2365-2460 MYNSMMEASRSERKRTDKQQRKEKLLYESLGK
23. 2444-2491 MNLWESEKKDFGKRLE
24. 2573-2608 MFERKAIPDRSQ
25. 2686-2727 MLFNQTDQRHKIND
26. 2723-2752 MIKAHSITLD
27. 2952-3044 MEGPFREGRLSLHFKNLFNTSWFGDLFCYVF
28. 3037-3093 MFFKWFKIFMFVFFIFRSQ
29. 3014-3112 MVWRPFLLCFLSGSRYSCLCFSFSGHSDLRNNI
30. 3125-3178 MQKQEYRVITLNINGLLN

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: