Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001631

Transcript Name: lnc1_zgc:174697
Type: lincRNA
Genomic Location: chr4:27761625-27762294
Nearest Gene: zgc:174697 (NM_001114431)


lnc1_zgc:174697
Exons
2776162527762294



Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 1.23 0 2.62 2.69 2.21 2.35 2.3 1.86 1.44 0 1.89 2.22 1.07 1.59 1.65



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 152-217 MFGEMQGTLFYTLRLFLIIYIV
2. 327-365 MTDHGSVLCASLK
3. 337-375 MGLFFVPRLNDLR
4. 375-458 MIWQILDILILITDLWLIRFFKQVCESD
5. 532-588 MISNAVIGCWHSSVMTSLN
6. 605-637 MNYIEFIGNGL

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Kaushik K, Leonard VE, Kv S, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V, Sivasubbu S
Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish.
Plos One(2013) 8(12):e83616
PMID: 24391796

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: