Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001628

Transcript Name: lnc_si:ch211-244b2.4
Type: lincRNA
Genomic Location: chr4:25320341-25340715
Nearest Gene: si:ch211-244b2.4 (NM_001014325)


lnc_si:ch211-244b2.4
Exons
2532034125340715






Expression Information

Negligible Expression across RNA-Seq datasets





Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 44-121 MTSILGSALKNETILDRVKSSISKSS
2. 159-260 MSIETLLGREVNCVIYLTKVKKGKVSLTSQNIQY
3. 301-336 MQYFSHSINASK
4. 326-358 MLQNRMDNWDA
5. 362-400 MMITEILNEGSSS
6. 384-581 MKAVVPKGRPHLCLFTSRDIMGDCVHSLRHLCCDMGKKPCPCIFRRNDGIRYIFSYKWLLERNSLY
7. 650-703 MNNCTKKLQLHNIFFSSA
8. 526-804 MVFDIYFPINGYLRGIACIKTLLNTFEQNIIQTQGFYSLFTNEQLHKKITAAQYLFFFCLKLLHNISNYKQSLINNYSTGLQYSTVLLCKKTK
9. 879-920 MKQSILSQLQCCSK
10. 930-1070 MAQLCDLQTTYKSAVYVFSYTIIKLHISKISKENSFTVCTKFLFCFD
11. 976-1098 MFLVTQLLNCTYQRYPKKTLSLYAQNFCFVLTNLILLNITQ
12. 1166-1216 MLVKHINVNSYYNRAER
13. 1315-1347 MQYKFFPFWCF
14. 1389-1427 MFVLAVNGERNGR
15. 1408-1530 MAKEMVDKRFLINRCDRRIRFVRGVRFRYNTRTACFFMSRQ
16. 1509-1544 MFLHVTSVMSCS
17. 1556-1648 MRTFLQVELACYLRLICFTLNAHVGPQTISI
18. 1617-1652 MRTWGLKPYQYE
19. 1815-1856 MFLYFCSIPEMYTK
20. 1774-1878 MFQITLKNNFIVCACFYIFVLFLKCTQNSCICGSR
21. 2049-2087 MWKIKIMHQHVCK
22. 2220-2267 MQRENFHVRERESILI
23. 2362-2451 MHYKMSYFGFKGLQQQANMHARSKNTFIVA
24. 2315-2587 MFQYFFPFHFLKERLLCIIKCHILVLRVSNNRLICMQGQKTLLLSHNMHLFLPNCPSNSLIFVQQFICFQTPPLREANLAVIGPMTQSAVI
25. 2637-2666 MKEPQCRVYV
26. 2606-2722 MRRRETPHHVYEGATVQSICVSAMQECIKALQLKGWYRM
27. 2752-2781 MQSGVCSCFT
28. 2772-2852 MFHLKKITFFHNSYFDFIQLLRLHEND
29. 2842-2892 MKTTDIFPSSSERPTLK
30. 2917-2976 MCCDLWIGSTSRPYKHVRFV
31. 3116-3148 MCAGTMFRAHT
32. 3019-3195 MRLLRECVCTIVCVCVCVRACVYYELSVTREAHVRGNDVSRTHIERGAARVCVCTCFFF
33. 3234-3266 MTQVLQKGGEI
34. 3266-3319 MRTLVTTSFLKMHINPTE
35. 3428-3526 METYVMYPLFTKTNMCLCGCVYICVCVFVFIAV
36. 3496-3597 MCVCVCVYSSLTDKYGLEAKSLAVANIISRCLHL
37. 3668-3700 MSWFRVHSISL
38. 3673-3714 MVQSSQHLLVAAPF
39. 3895-3924 MLEEVLLLDR
40. 3927-3968 MFCFKTILVRLSLC
41. 3985-4110 MNALYAQTCCLATEMSRRKIDVIIFSFIRSFYSIDNVDLYLV
42. 4220-4288 MLGQCEPGLLSGQAGPIAWEVEQ
43. 4302-4334 MSCFHCRASSL
44. 4479-4547 MTCYSTAVYYMSMHMLVCFYSLY
45. 4475-4702 MNDMLQYSSILYVYAHACVFLFIILIYSPTNCWYRTSSGLATNTGTQRRERNIHNITPQKFSVKNSVENVFYTILI
46. 4733-4792 MLRRDLKHSFFLIGYMTLNR
47. 4821-4994 MLRVPAAELVGRLKCLNYQEKQNHKKTSVSFLRSSLVASEVNTTSIAMVTHSACFLNC
48. 4979-5023 MLSQLLMLFCFKPSH
49. 5079-5174 MTKQTLLLWIHNGVSHTPQQRKDGSCQYNLSS
50. 5113-5190 MVYHTLPNKEKMAPASIISHHNTFYP
51. 5321-5350 MWCLIHLISL
52. 5308-5391 MVTPNVVSDSSHKPLKCLPCFGSRPRNS
53. 5505-5537 MVTHSACFLNC
54. 5522-5566 MLSQLLMLFCFKPSH
55. 5622-5717 MTKQTLLLWIHNGVSHTPQQRKDGSCQYNLSS
56. 5656-5733 MVYHTLPNKEKMAPASIISHHNTFYP
57. 5864-5893 MWCLIHLISL
58. 5851-5955 MVTPNVVSDSSHKPLKCLPLGMTEFLADLAFHKLV
59. 5959-6027 MWVFCHVWIFGLGLFGQFPLNSR
60. 6127-6159 MSLSMSFVFHR
61. 6396-6443 MMSLWLFSCVCCALNQ
62. 6284-6487 MTERFLVLYRLCSPMCFSFSFRLSLWRITGRFISWLVNDESLVILLCLLCPQPIIVLILILITIRLKG
63. 6697-6768 MISIFQVHLSHLGFSRVLCHQAVR
64. 6995-7030 MSCAIVRMHNLW
65. 7034-7087 MFLPFFLFLLCQCSHHLE
66. 6973-7098 MVSILSLHVVCNCTHAQSVVNVPSIFPFPSLPVFSSSGVVFC
67. 7248-7310 MKSLKILSAAVLPDLFLVAYA
68. 7473-7574 MQGHFRVTYISMSFFMNGQKNLSLASFTTLSTPT
69. 7581-7619 MSLCKCWNTNCLY
70. 7522-7704 MAKRICLLLVLQLSLPPRDPCHYVSAGILTACIELVEQIDVVAQFSCTIIHHPGVVLTIRA
71. 7740-7829 MSLVRLALDSFILIISPIAESSLCAFRSSL
72. 7992-8141 MYWSMLSGHRERMSASTFTFPGLYLISNRKSDSSPTHLYPTALSLAVLSM
73. 8255-8293 MESVISFGLCQCP
74. 8375-8440 MKCERQVKIRICKDRWSSQSFN
75. 8462-8491 MFFLPLNRCS
76. 8494-8538 MVFEHSFFHLPSILF
77. 8893-8964 MGYNIHHAVSPASLPYFVERQQVH
78. 9015-9059 MKAVKCRDPSAIKPW
79. 9143-9172 MPVRNSFLVK
80. 9129-9179 MRGKGCLSGTVFLLSNL
81. 9334-9366 MLSGQECCQSD
82. 9288-9479 MYSLTSLCSGLGTEQYALWTGMLSIRLIGICKLGTQPTTSSLRAKAPDSSYNILFAILCCFSVK
83. 9572-9649 MDWFCYLVGFHNFFNGLYTTDCHSSW
84. 9615-9662 MGCILPIVIRRGNVMS
85. 9671-9724 MVSYWNVNEWPLSPTDFQ
86. 9697-9771 MAFVSHRLPVIHLQCQVVQAVGCLH
87. 9687-9821 MLMNGLCLPQTSSNPSPMSSRSSCWLSTLDSNKMVGSNKSKSTGI
88. 9833-9973 MCQLTRRNNNILTSNFDYGLSVTRWLLCLYKIYDYFSLFISNLHGSH
89. 9885-10097 MVSVSQDGFCVCIKFTITSACSSPISMAPISRVAIVVRTFGPFVCPLTNCSMTLNPRRGRSRAILPTRKGT
90. 10329-10571 MLHFNKHLLPINSATLFCVEFVFLDILEQAALFALASQASFSGCLSSVDDLSSADWYIFLVPLVLLPQPIALCPFSPQIKQ
91. 10579-10653 MSCYSPVYTLGTHMALLFSLTLVCV
92. 10764-10841 MVFVLFFFCIFEFDSLSLDSESICAL
93. 10841-10876 MSLSMSSLYDLT
94. 10952-11107 MICEQRFQFTSDVIVLRKKALMNGTQEHILNCSWFIFNVCFALFGCKNYFLF
95. 11064-11177 MCVLLCLDVKITFCFRPITRYKNCCGVSCSRCLVLINS
96. 11220-11309 MKLFSSGTVRSSLLMSISLNCPDLTIRRTA
97. 11343-11375 MPSSICLHRLL
98. 11466-11501 MLSLCCCGKYSG
99. 11443-11517 MESLLDTLCFLSAVVVSIQDKQTVL
100. 11668-11700 MPVYVHQIHVH
101. 11710-11754 MDHSQYCSHTSHSTH
102. 11678-11767 MCIKFMFIKNRWITRSIVHTLLTQLINHVS
103. 11760-11828 MSLNVSNCANPSSSSFSKLSLCI
104. 11770-11835 MLVIVQILHLPVSVNCHSAYKK
105. 11835-12152 MMKFKQLSSSSLAMVGGIKPATEVMLSAIYPSSCTFNLCRLFFIFQTSLFLSSAILSSFRLSHDPLVMRRLPLSLVPFASLWTSAAASSRPQSCRRLVTVKSGSQH
106. 12192-12371 MNLLRVPAAELVGRLKCLNYQEKQNHKKTSVSFLRSSLVASEVNTTSIAMVTHSACFLNC
107. 12356-12400 MLSQLLMLFCFKPSH
108. 12456-12506 MTKQTLLLWIHNGVSHI
109. 12490-12537 MVYHTYNSVIVCKVKC
110. 12621-12710 MYLRKKHSIAYRKKGSEVSAFTHPKNSLFA
111. 12792-12827 MSKIFLLDLCKV
112. 12832-12870 MALKRFTLCNVYT
113. 12855-12908 MQCIYLNWFSFCCFILVY
114. 13018-13083 MDTKFVKFYVFLLYSYGVLSPK
115. 13288-13317 MKTYKCLTYK
116. 13515-13625 MASEVTVETQLALARPGSLALGVAIDSLQHSASGHGP
117. 14230-14274 MIGNQRSSRTALQWK
118. 14278-14322 MTSGLSLVVCSGKEA
119. 14274-14330 MNDFRSVACRVQWKGGLTL
120. 14383-14427 MLFMFTQLHYTSTKV
121. 14611-14640 MTNNRVQKII
122. 14677-14715 MVLDTVCKQPIQI
123. 14744-14779 MYNRYKITSRAG
124. 14895-14945 MNCESFYNNHSFIMSLV
125. 15136-15267 MIITSSPLSCSPRDISCPTAPVVSFSNFFATSFTKTPNSFKKKS
126. 15283-15315 MYFNNNNCFYF
127. 15390-15455 MTISIILNQKIIQSYSKRKCLG
128. 15478-15573 MCKGREFHNFGAVQLKVLPPNDFILKFGTDNS
129. 15658-15723 MPFQYIYIYIYIYFKKLEAEVL
130. 15772-15888 MGNFNGISCQSSERVCKRANEMPNELAASACTLDACCNQ
131. 15830-15895 MKCQMNWQHQLAHLMLVVINKE
132. 15917-15985 MTLTFSLQRLLQPSERVDESSSC
133. 15969-16019 MRVPPADIQRFRMNESG
134. 16207-16299 MTPGTRRPLLHRRVGFHCPTRIQTRSPHPGR
135. 16188-16406 MVALTFDDARDQTSIVASEGGLSLSDEDPDPLAPSGQVSTVKTDPEMDMLAVLSLAASAVGLEMIYPPAPRLD
136. 16556-16624 MALFTATQTSIKEHFSTSPDVTA
137. 16649-16801 MPSSLQVLCISPVAHRHWEDTLLSPTPRAPPPELGCKVRVNLSPPALPRDP
138. 17096-17149 MESRFYSPYFIVPKKNGG
139. 17046-17162 MLSSWRRMQSSRSLQPKWRAGFTARTSSCPKRTVGNDQS
140. 16933-17205 MHNQTRLRNSIHKTATQVHGCVLHQGQPPVRPRLARGECCPPGEGCNRAGPSSPNGEQVLQPVLHRAQKERWVTTNPRSARFEPLSAQAAI
141. 17210-17344 MLMQKRILRCVRPQDWFAEIDQKDAYFHVSILPCHCQFLRFAIES
142. 17292-17423 MSPFFHATVSFCGLRSKVELGNKKSSLSGSLCLRGSSPSSRTVP
143. 17308-17439 MPLSVSAVCDRKLSLGIKSPPFQALSVFAGLHQARGRCLSAPSQ
144. 17480-17557 MHRDSAPAPTPLGTSGQPRKEQTRSP
145. 17557-17649 MTARLSGEHAQLMLNCLREFDSKIVVPLKLF
146. 17668-17847 MASTAAVTPLRLLHMRPLQHWLHDRVKPDALSARAGGLCVADMQLWACGKEPSCIGISIA
147. 17960-17995 MGGICSSGVIHG
148. 18056-18094 MAAFTSRRTETSP
149. 18037-18108 MQPMHSHGSLYVPENGDFTLSLFS
150. 18213-18266 MHWPTAGLGACANMRFPQ
151. 18616-18747 MVRLSQRRPPKFARSALCFLSSKRSWRAGCRPSHSRLRGCHLFS
152. 18747-18914 MMRWLATPWEGITSSSGYSEALGELILPTPFSCPLVISPSFSRACVRSVRTSTQYL
153. 18113-19000 MGAIRGSPDRLVCFPRERSLPVVFSLTEGSLSTDALAHSWPWGMRKYAFPPVSLFAKLLCKVREDEEQVVLLVAPLWPNQTWMSELSLLAPTLPWQIPLRDDLLSQGQGTIWHPRPDLWNLHMWSLDARITWVTYELRWLIPSPRLEPPIPPPPLERTYILKWSLFTEWCASHKEDPRNLPDQRCAFFPPKEAGEQAVALHTQGYVAAIFSHDAVAGNTMGRHNLIIRLLRGARRINPSHPLLMPSCDLPLILTSLRQIRSNLDSVSLRFLSLKTALLVVLTLIRRVGDQEAFFSQ
154. 19063-19101 MCPGLLPHGLKTR
155. 19294-19356 MPSPLLTRARASRVPQEFVCT
156. 19460-19534 MLAAPFSLTRSNVRFFHLSVKFPVR
157. 20006-20056 MQERSCYAWLSSHQRRR
158. 20025-20105 MPGYPLIRGEGKVQSLWRFPDISPFVD
159. 20020-20112 MLCLAILSSEAKVRCSHYGVFQTFPHSWINK
160. 20072-20164 MAFSRHFPIRGLINKSTDSISVPLFGKRGLL
161. 20289-20336 MQCRNFHIRERDSRGI
162. 20275-20373 MAMIKCSAETSTSGKETVGEFNVLLDLSRVSIQ

Variant Information


Variant PositionrsIDReferenceAlternate
25322631 rs180036963 A C

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: