Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001627

Transcript Name: metap2aoa
Type: Overlapping
Genomic Location: chr4:25093574-25094589
Nearest Gene: metap2a (NM_001100054)


metap2aoa
Exons
2509357425094589




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0 0 0.13 0 -0.07 -0.98 0.71 1.23 0.86 0 0 0.84 0 0.38 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 96-155 MGTLGGSVWVLAGERRWMLM
2. 276-305 MHKTMTKSKQ
3. 391-426 MMLRCGLNVVVM
4. 451-486 MQLRSEFNVVAL
5. 473-508 MLLHCDLNVIVL
6. 495-572 MSLCCEINACFLNCRWIVILLLLCTE
7. 592-624 MLCCNPNVIAL
8. 611-658 MSLRCDFKGAVSKSSE
9. 682-804 MSLHIPIVTIKENHPNVFICILIFWVRHKTKNCSSNQNLSI
10. 981-1013 MTPWLKYFFET

Variant Information


Variant PositionrsIDReferenceAlternate
25094440 rs179656947 A G
25094444 rs179657090 C T
25094445 rs179657101 C A

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: