Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001626

Transcript Name: lnc2_mdm2
Type: lincRNA
Genomic Location: chr4:22347336-22347770
Nearest Gene: mdm2 (NM_131364)


lnc2_mdm2
Exons
2234733622347770



Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 2.69 2.06 1.81 1.53 0.21 0.06 2.14 2.31 2.4 2.26 0 0 2.7 0.83 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 101-178 MVHNPGKLSIFCLLGGVDLWRIKTGT
2. 295-336 MSFFNFPPFMLCLT

Variant Information


Variant PositionrsIDReferenceAlternate
22347363 rs40737979 T C
22347405 rs40800436 G A
22347424 rs41096331 A G
22347603 rs40883448 T C

References

lncRNA has been predicted by:

Kaushik K, Leonard VE, Kv S, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V, Sivasubbu S
Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish.
Plos One(2013) 8(12):e83616
PMID: 24391796

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: