Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001625

Transcript Name: mstx121
Type: lincRNA
Genomic Location: chr4:22346388-22347001
Nearest Gene: mdm2 (NM_131364)


mstx121
Exons
2234638822347001



Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 2.28 1.67 1.44 1.14 0.25 0.76 1.4 1.91 2 0 0 0 2.45 0.64 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 96-134 MFSIDKILFLDTF
2. 253-330 MSRHLCHPNVHKDLFLLKLAAFFHHV
3. 326-355 MFRLTVYYRP
4. 504-533 MSVSIVIIIM

Variant Information


Variant PositionrsIDReferenceAlternate
22346770 rs40841221 T G

References

lncRNA has been predicted by:

Kaushik K, Leonard VE, Kv S, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V, Sivasubbu S
Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish.
Plos One(2013) 8(12):e83616
PMID: 24391796

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: