Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001621

Transcript Name: lnc_ppfia2
Type: lincRNA
Genomic Location: chr4:20893243-20893583
Nearest Gene: ppfia2 (NM_001045111)


lnc_ppfia2
Exons
2089324320893583



Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 2.64 2.71 2.2 1.97 2.15 2.2 1.83 2.85 2.22 2.99 2 2.49 1.93 1.76 2.04



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 79-117 MLVVLSKSSGKSE
2. 117-173 MTLTVNVIVYVKVTYFSIV

Variant Information


Variant PositionrsIDReferenceAlternate
20893319 rs41232479 A G

References

lncRNA has been predicted by:

Kaushik K, Leonard VE, Kv S, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V, Sivasubbu S
Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish.
Plos One(2013) 8(12):e83616
PMID: 24391796

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: