Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001620

Transcript Name: rps16pa
Type: Promoter
Genomic Location: chr4:20591934-20592796
Nearest Gene: rps16 (NM_001076732)


rps16pa
Exons
2059193420592796




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 2.05 1.55 0.98 -0.29 -0.27 0 0 -0.33 -0.63 1.43 0 0 0 1.16 1.52



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 15-74 MMFDSFVYFCLVWGCFFYLK
2. 74-115 MTDYLFIPVQQAVI
3. 171-227 MINVFLLICVQVESLHLTK
4. 315-377 MHSQLNSSSCASHQNLFPDSS
5. 341-415 MCFPSELVPRLLMMRHVNCALHKLV
6. 415-561 MNFFFFFFFFLLGDLTFPLQIWGVFILNSLFLFHLLSSPLQCPANSSNH
7. 666-725 MSQSQPLSQLCHTGCHRVPC
8. 656-733 MYPDVPEPTTLPVMSHRLSQSPLLSH

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: