Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001619

Transcript Name: gcc1oa
Type: Overlapping
Genomic Location: chr4:18995010-18997685
Nearest Gene: gcc1 (NM_001003599)


gcc1oa
Exons
1899501018997685




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0.94 1.06 -0.06 -0.34 -0.01 -0.42 0.52 0.64 0.63 1.73 1.16 1 1.3 1.4 0



Mutant Information


ChromosomeMutant PositionZFIN ID
chr4 18997121 la015363



Predicted Open Reading Frames


ORFRangeSequence
1. 96-161 MYFDTIFYFKMLSIYKCADKTL
2. 143-178 MCRQNIVKYISQ
3. 209-247 MYTIFVDLCLFIY
4. 251-313 MLKQFTCYSKYSCYNLGLIYA
5. 309-347 MRENVCCVRLFMY
6. 268-372 MLFKILLLQFRADLCVKTFVVCAYLCIRYVLWYNP
7. 423-527 MNIEMFIFYLILLYFWLNMLYTNVHFVSVNLSDFS
8. 353-634 MFCGIIPDVMLKYENVIVGYKHQNEHRDVYFLFNLVIFLAKYVIHKCTFCKRKPFRFFLKIYICMSLISKSTNKKAAITVNLFKRHIYVSLLGM
9. 615-644 MSRSLACNVI
10. 661-735 MIIIIIIIVIKKILIIRHREWQKVQ
11. 974-1054 MNHIYIHKVLTHIDCHALIYLPNKSSY
12. 1081-1125 MDETCKPGCIETGIH
13. 1085-1171 MKHVNLVASKQAFIKKIIITYYSIIYTIC
14. 1645-1698 MCAIHSKKNVHHSLEVQF
15. 1670-1717 MFITAWKCNSKHFIFA
16. 1729-1812 MHHESENLRHAVIVYNRIFSKVLNMLFI
17. 2137-2208 MSSPCLRGFPPGATVSPTIQRHAL
18. 2254-2292 MTVYGCFPVLGHS
19. 2264-2311 MDVSQYWVTAKRACAV
20. 2244-2327 MSVNDSIWMFPSTGSQLKGHALCKTYAG
21. 2302-2349 MRCVKHMLDRLATPDE
22. 2345-2377 MNKGIKPKENE
23. 2373-2474 MNESMSKVIFITYYEILGEKMQRFKKSANNFAFN
24. 2545-2580 MHFFITEQCFFM
25. 2636-2668 MVVLQCGLFHV

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: