Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001617

Transcript Name: rint1pa
Type: Promoter
Genomic Location: chr4:17582640-17586882
Nearest Gene: rint1 (NM_001045003)


rint1pa
Exons
1758264017586882




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 1.48 1.89 0.9 0.34 -1.08 -0.86 -0.87 0 -0.78 0.87 0 0 0 -0.29 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 19-186 MNSQSQTARFRLWWSFLCDWQGGRRHLFPQQSGTSLFINIRTLFFFCYENVSSTSC
2. 351-395 MCGYLTNICFICAWQ
3. 474-509 MSYPGIVVVHKT
4. 729-821 MMFLKLAHYTSPAEHGSQHQNTVPSGLCTAS
5. 772-861 MAVSIKTQCLQVYVQHPENWGAFCCTTEPR
6. 809-877 MYSILKTGAPSAVQQSQDKEEDW
7. 1077-1133 MKNTMYLGSQQVVVLICIF
8. 1019-1198 MNLLLFFKQIHFLLQKKLTDEEYNVFRVPTSSSINMYILRQFICPPVKIFLFFRYFPSAV
9. 1350-1406 MRICNSPIAECAMLSLDYS
10. 1586-1618 MYVFGKFICSN
11. 1578-1622 MYLCMFLVSLYVQID
12. 1609-1641 MFKLIKLILFK
13. 1675-1752 MFRSGFLQLPSTNSLSRGSADIKYRF
14. 1800-1829 MILQWRSLLT
15. 1772-1837 MHKAHFSSKYDTSVEISPYLRE
16. 1848-1883 MLYSLNLSLVTI
17. 1899-1931 MVRSGFTENNR
18. 1991-2020 MMKEKFNMSQ
19. 1948-2040 MLKKIFNKAILNIANDERKIQHVSMKFEVQI
20. 2043-2081 MHKKLKCTPINPI
21. 2060-2092 MHTYKSNIGPK
22. 2119-2184 MDVTKKVCEFTVYKILGRNSVN
23. 2289-2336 MRKKCRYGCNTFLLWM
24. 2312-2362 MQHFSVMDVTNVKLPLV
25. 2308-2382 MDATLFCYGCDECEIATCVILVNQI
26. 2435-2494 MQKDFSSYMFSAYKLVNNQL
27. 2644-2679 MEKNTVLRISVL
28. 2612-2704 MLLLNKMFLVKWKKILYYVFLCYKYILYVVC
29. 2763-2816 MCIHTYYKAIDVNTLTQM
30. 2794-2826 MLIHLHKCNQL
31. 3016-3165 MVMKYIFTARITFLNRKYLVKYISNCCVPENTLHMFNIFFHSIIIIIKNE
32. 3211-3264 MYQIYASFNSCLCCCFSY
33. 3161-3271 MSETTIKDSEFILQFHLCIKYMHHLTVVFVVVFLTRS
34. 3338-3424 MKNEPVKCTTSMQGYRQSRGAIKKTSQDH
35. 3345-3515 MSQSSVLHPCRAIGRAGGQSRKRPRTTDEHSLHIRLPLGRSSPTIKNLLCFSDGMAD
36. 3427-3537 MSTAYTFAYPWGEAAQPLKICSVSVMAWQIDSVTLPV
37. 3582-3611 MNPPQKWYCL
38. 3599-3688 MVLFIGKPLHHLNQLCTFCRVHTKNLYVYL
39. 3678-3728 MFTSKQLILKKEICSCD
40. 3759-3809 MWVATNLSVTIFVGETR
41. 3733-3813 MLSAVFSEECGWPPICLSPSLLEKQDD
42. 3809-3847 MINLPDTVKPNSI
43. 3927-3986 MLKRHYLITYVLICSHFLYG
44. 4010-4075 MVEKVFTDLFYFFITSSESTVT
45. 4195-4242 MYVSVTKDDIYDSVLE

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: