Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001616

Transcript Name: socs2oa
Type: Overlapping
Genomic Location: chr4:17487725-17502258
Nearest Gene: socs2 (NM_001114550)


socs2oa
Exons
1748772517502258




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0.37 0.95 0.66 0.79 0.73 0.8 1.34 1.29 1.87 1.43 2.07 1.46 1.68 2.58 2.88



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 281-331 MIFLFSAQQLFQEERII
2. 340-450 MAFMSCKKLMYLCKSFWCYFACLILQLCAIFRSIQCK
3. 402-557 MSNPAALCHLPQHSMQMMSYFSVHCNYGIVPHIDIRATLSSSTFVSNPFTIC
4. 602-667 MEFKLNWKHPQRRKKRSKCDPT
5. 683-733 MKIFLFILLSSSGCKPF
6. 809-880 MASRHFSKYLLLCLTEERNNPGSF
7. 721-927 MQTFLIFFSENIFSAIDFHTGKKIYTMDFYGLPTFFKISSFVFNRRKKQPGLILIMYPYVHFWREQNTS
8. 896-1042 MYISGESKIHPRSYVFCSFCFRESIRGRCVHFFRSQISLASGKKGLAAD
9. 1052-1105 MQSELHPMLFNTLTQQHL
10. 1204-1278 MHTHSIASAIRTCSSSVNAPEATVD
11. 1766-1849 MSLCWKQTRFEISRQKRNDDRFLSELSL
12. 1862-1903 MSCSVILCFSLELI
13. 1906-1938 MLCYLSLIYAL
14. 1911-1997 MLPIFNICFITQTCKILKKQHNAKRKYCL
15. 1975-2040 MLRENIVCEFKLKLNHLTPCEE
16. 2077-2130 MMNRIINEIIVYNHISIK
17. 2145-2210 MILLTLVCCWGCFQALWGDFES
18. 2358-2390 MHGYKLSWLYN
19. 2362-2406 MVTSCHGFTIKKISL
20. 2378-2599 MALQLKKYHYSGSQWGKNSHKHNKRVLNLNNTQGLISKRLRYRSESYLLYCVFAGVHLPVTNLNEQLRYYHYYY
21. 2605-2688 MNSTSTLTILLKIQIISIAGAQTAIHLL
22. 2749-2796 MCDVIQQWSLTAFRHS
23. 2861-2911 MVNYVLVNGFYVLRLVH
24. 3002-3040 MSCSDLHCQALVM
25. 3191-3223 MYLLTSTINIY
26. 3242-3334 MINNKQRIYLTFINALLNLNSSLLTKDNGLR
27. 3402-3443 MYCLLFVYVSKCIN
28. 3370-3453 MLTKIIKYCYKCIVYCLFMLVNALTNIN
29. 3629-3658 MQIFAILGNF
30. 3858-3923 MEFLCSSADPDGASPLFILLYA
31. 3838-3957 MLNQYFQWSFCARLLILMVLAHYSFCFTLEQLNECLSLFN
32. 3961-3993 MYCNYITALML
33. 4174-4221 MCHLTDQMPSDHKNYL
34. 4245-4277 MVIIKLALCVI
35. 4268-4315 MCHLIDINQKFRMHKK
36. 4315-4374 MIVNKFILFCPKILIDYFVA
37. 4692-4721 MKYNYVVITL
38. 4837-4893 MYGYSYSIVMAKNGSFYCL
39. 4787-4903 MCHLKLSPKISICLKLLCMGTVILLLWQRMGHFIAFNVK
40. 4936-4995 MCIIEDFTLHRVLSHIFFTC
41. 4992-5054 MLKTILFVCVCVRACTVVGVI
42. 5080-5148 MCTASDFNRSRYFSVSSMNECML
43. 5139-5174 MHALGGNKRELV
44. 5405-5446 MVSIFNREIVAFLR
45. 5613-5687 MENRLAKLGVQFLNQVAQHLRNVQD
46. 5585-5707 MEGTRRAVANGKQTGQIRSTVSKSSGSTLEKCSRLKYYELL
47. 5697-5738 MNYCEACNVVYKNK
48. 5741-5794 MYLSKALHLDIKKKNHYF
49. 5719-5904 MSYTKTNNVFKQGTAFGYKEKKSLFLNDYHYTLSQLTDYCTLLQFYKMLRLIIQIMHCFLLN
50. 5988-6065 MLRQPFIFYKCLLYCCLSSDSDFVTD
51. 6189-6230 MKYCEACNVVYKNK
52. 6211-6273 MSYTKTNNVFMLGTAFGYIYI
53. 6352-6390 MLCLIIQKGIIYY
54. 6357-6395 MFNYSKRHNLLLN
55. 6533-6919 MLCLIKASKRHHSLLNWLICIHFIKSFYILAHKTVTLLSILLLLLYYYHYTLAQLTDYCTLLKLNNILFNYSNKASFITKLAQLHAFLEQKLEHSCHCIISCCYNILVYITLVTIFCYSCHYSFITTLP
56. 6954-6998 MLCLFIQIGHHLLLN
57. 6959-7018 MFIYSNRSSFIIELAHLHTF
58. 7204-7263 MFNYSNKASFIIKLPHLHTF
59. 7199-7306 MLCLIIQIRHRLLLNYLICILFSTKIGTLLSLYYLL
60. 7339-7371 MLLSLYSSPVD
61. 7593-7637 MLCLIIQISLHLLSN
62. 7598-7741 MFNYSNKPSFIIKLAHLHTFIAQQLERYCSFPQYISEEVFTKYWGSPF
63. 7773-7844 MSFDICYLFKMRCNNKNLFLDNLR
64. 7808-7873 MQQQKSFFRQLTVIVLCLIYLN
65. 7855-7896 MFNLLKLVTINKLT
66. 7907-7936 MLSQHKSVFL
67. 8005-8067 MWLKWIFIMRKQRNNQVKQNS
68. 8216-8245 MYAYYIFSTL
69. 8220-8273 MLITFSAHYEPEVHVLNV
70. 8269-8361 MFERLPGCGCVTLMMGVIISSAHDWLIQGQK
71. 8336-8572 MIGSFRGKNKGVNLLRKTNYCVCLKMFFSSLIFHSFNKQSINKRDRVTEQGIKAMLAFYFSLFWETIAPDATQCCRMIK
72. 8764-8799 MCQQGFRLYIYF
73. 8871-8909 MILQKSFYYYNLL
74. 8943-9005 MVLIIHFLLYVFVKAVVGFTF
75. 9018-9050 MNERCRIRAFS
76. 9079-9120 MSCDAFFVQFKVSE
77. 9089-9133 MPFLFNLRCLNKSIL
78. 9162-9200 MIKHHNFYKNINM
79. 9504-9566 MERGKNMTVMNRTLSGPFFKG
80. 9574-9603 MHVSLNQYRK
81. 9700-9729 MYFSFGLCQK
82. 9729-9809 MTIQYRIKYIHQIRPISMQVYQDALLR
83. 9843-9890 MQQKQKQTMLLNYLLV
84. 9895-9999 MCNKILSRWYISFAKEYTPFKPGEWQGPALASLSF
85. 9966-10004 MARTCLSKFELLN
86. 10014-10085 MYFTAQKFGVSTILKVYQTKLYYS
87. 10136-10201 MILQKQFNMQITILASIFYYHC
88. 10272-10355 MSLVNKSSNFFKNVITGPKILNCSVCLV
89. 10346-10381 MSCITVLTKGYS
90. 10384-10491 MYSFSRYYNIMLTHIKIYSISYRKVLANSQQFLGQP
91. 10501-10530 MIIYDYSTKI
92. 10588-10632 MSQTQDAKHLRHLLQ
93. 10511-10657 MTTVQKYNMNKEQIKHIQKAYSFKLPCLKHRMQNISDTCCNKRRVHPKK
94. 10657-10737 MKSCVILDSLSPCSKIIRLSFFCGTQT
95. 10745-10849 MSQLGCGMEDFKSTITSQFKNLYSPLNISVVNRFF
96. 11025-11093 MQKWLEMLYYSCQVTSWQSLSAF
97. 11033-11155 MARNAVLFMPGHQLAKSLSILSKMLSCKMLLGRLIRSYKQL
98. 11327-11362 MNYVARFTYGCI
99. 11383-11427 MGWYDTISFLACTTV
100. 11393-11461 MTPFLSSHVPPYEGLFHCYQFVQ
101. 11415-11501 MYHRMKGFSTVTSLSSSSTCTSAYLSRRA
102. 11471-11542 MYVSVLESQSVVDRDNGNSRIKVW
103. 11517-11600 MAIAESKSGEERFQKPSKMKTKFKKKNK
104. 11946-11975 MSLGCQNHLK
105. 11921-11995 MYTGVGNQNEPGLPKPSEVSIILFG
106. 12073-12198 METQLLLLLHLNLFSQVCIFRPPKCAIMNNQSAYIFSGFSLA
107. 12279-12332 MLMESAAYGCQWATQFSG
108. 12301-12360 MVANGQRNLVANLYDPISTF
109. 12341-12430 MIPLVHFNTICISPYMMVGFSGRIWRHCSF
110. 12497-12541 MRLDCNGRHHRSSRS
111. 12513-12545 MADTTGAQDLE
112. 12454-12573 MKSYLTICQIVMFPHEIGLQWQTPQELKILSDLKKKGELV
113. 12573-12605 MNIATFSGINM
114. 12652-12702 MKKKTQKSFCAPQKKEN
115. 12756-12788 MHGHTLFIWWL
116. 12760-12861 MATLCLSGGCNLQISLTHRFQCRQRLAYTAHSLV
117. 13016-13078 MRNWKKFSKFNESQSNLVLCV
118. 13154-13186 MTDRSLLSTLK
119. 13138-13272 MRVNNNDRPLTLKYFKVVLGHTKRDRRQMILNKTSAPHLHWIYDQ
120. 13265-13321 MINRSSALVVTVVHRFYTL
121. 13397-13531 MAIRHRCCRDGVAVYTGVVRSSCTVPLDGAIWLVLPLQDVRDSCT
122. 13806-13856 MVMHIRFHCICFSRLLV
123. 13534-13917 MLHEMHHAVELLEFGFDQHHRVQLELAVLVFDPQVGRSRRCHGGDGEEVVPLRAVPDEKRPLRRVLQDLLGFIGCQAAPIPACFQEKKTQRWSCISASTVSVSVVCLCNMRHITRSSKDTHTKTDTAT
124. 13971-14087 MNKKSQHVTFNLAALFPLMHRAKSHLIMQQKASTSEMSC
125. 14120-14167 MWHSKTKQRCEKCQQR
126. 14258-14305 MFPKRLRMFCSTRKQT
127. 14247-14321 MFGRCSQNASECFAPQENKHKVDIL
128. 14227-14361 MKFFKGRCLADVPKTPQNVLLHKKTNIKWTFCRIIITVCCFFLLI
129. 14340-14381 MLFFSLNIMCNGIN
130. 14463-14501 MIMSLFCCKIAKQ

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within the exonic region of the transcript



References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: