Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001609

Transcript Name: zc3hc1oa
Type: Overlapping
Genomic Location: chr4:14071607-14072092
Nearest Gene: zc3hc1 (NM_001077378)


zc3hc1oa
Exons
1407160714072092




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 2.36 2.54 2.43 2.14 1.65 1.32 0.8 1.79 1.48 1.63 1.25 1.81 0.97 1.67 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 126-191 MSILGHLLCTKTATGIFHQGFQ
2. 205-297 MLYLYAGLFTAPLLHSSRTFTLFLQLPSHYR
3. 218-313 MLDCSPPLSSILLALSHFFCNFLLITGELLPV

Variant Information


Variant PositionrsIDReferenceAlternate
14071726 rs40819828 T C

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: