Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001608

Transcript Name: edal20
Type: lincRNA
Genomic Location: chr4:13239145-13241205
Nearest Gene: pus7l (NM_001044957)


edal20
Exons
1323914513241205




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0 0 1.44 0.82 0.48 0 0 -0.34 -0.42 0.48 0 0.53 0 0 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 57-296 MVLAFAAQLSYRPRYVYDLVRVSLCAFGFHPLLRPLFCYTAPGIVFGVLRTPELGFVPTTLRNLVRNQRVLPVVPSWLSH
2. 100-342 MFMIWSVFHFVLLVSTLCSALCSVIPPQVLSLVYSAHPSWVSYPRLSVTLSATNVCYQSCHPGFHIDTCFLAHFVCLMMAI
3. 431-478 MRCFSVYLVIHYSEFA
4. 575-613 MFYFCLIAVLSAA
5. 712-789 MLLDLVLIKNLFMCLKILVYRSKHWQ
6. 818-919 MKTQRFYHWAIEAVSKSSFEQGFVKNIFCWAKNV
7. 945-1067 MVGFEPRSLRRKVKDFTTRLLNLMALCGFGQSFVESFNLYG
8. 1145-1297 MLKDFTPEPLSLRFPLCFGLLFYRQLSETAFTFIKLTTNAHSKLLLASQLQ
9. 1391-1474 MKFCFICLITHTHGRLSSSMITHTRTCF
10. 1505-1582 MQPFDYKSKSLTTRPQLPLIISSRCM
11. 1643-1684 MSRSGFEQLFITLC
12. 1772-1810 MFFVITLGFVYIS
13. 1817-1852 MVRLINLYRCTA
14. 1747-1866 MRILKCYKNVFCYNFRICLHFLIHGSPHKPLQMYSIIFPS
15. 1985-2041 MLKLQLIHKQMSGILLQVR

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within the exonic region of the transcript



References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: