Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001607

Transcript Name: lnc2_pus7l
Type: lincRNA
Genomic Location: chr4:13239017-13251508
Nearest Gene: pus7l (NM_001044957)


lnc2_pus7l
Exons
1323901713251508




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 1.38 1.33 1.57 0.56 0.41 0.31 0.52 -0.08 0.41 0.54 0 0.49 0.08 -0.07 1.08



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 377-478 MEGGVEKKEGKIFFFGKKTFFFEKIPQTSISVVI
2. 639-680 MFLQKKSNYILYYQ
3. 625-741 MIKNLCFCKKSQTTYYTTNKPVQLFNVVTNKGSKIITIN
4. 829-867 MTLHSSILNHGNK
5. 857-889 MGINNINFIRK
6. 954-992 MQLYNLNMYHYIF
7. 1006-1038 MKLDTQIINSG
8. 1100-1216 MNSLDCRQNKQHYCLILLFYMIIFTGITAIQTSLTIKCK
9. 1210-1239 MQMKHCFIIL
10. 1272-1307 MECPAFLHIIQR
11. 1315-1353 MFLPERAEMCADK
12. 1560-1592 MTSSYRRSLNI
13. 1857-1892 MNVETIGEILVQ
14. 1895-1930 MSSQRNWSNGGR
15. 1920-2015 MEVAKWPVFRVIWTNTDKQHETQDLQHYFWVV
16. 2135-2173 MKVNKYIYLIAFD
17. 2202-2288 MISTVAHLLIYIYIYNIYIYIYIYIYIYI
18. 2378-2479 MWCSEHFCLFTKQLFKNIIHTHHYFSKFCLTDDI
19. 2500-2535 MLLLINLVYFII
20. 2591-2692 MSMLCVCFKGHKCMYQCKCSLYARNVSAMAKQVS
21. 2571-2705 MLRLELKCLCCAFVLKATNVCISASVACMQGMCQPWLNRLVEVKS
22. 2708-2761 MDKLNDHKRELKLTCCRC
23. 2758-2886 MLVEDKLDRKEGKVDFFCAGPDQLRPATKPILYQHDFFSRGDR
24. 2861-2950 MIFSAGVIDNIDKLFFSQIYNIYHTQKTNK
25. 3078-3116 MSSFALFLLLCHH
26. 3156-3188 MQTIILTLTLH
27. 3107-3220 MPSLIVKINHQRRPPLNANNYFNINIALTSSCAGKHII
28. 3260-3310 MQMHCIGKDLIIPVNLN
29. 3220-3375 MTEVKSSFTIIIFYADALHRKRLDHPSQSKLEKSFQIELFKSSGPGFSKVIH
30. 3869-3904 MCIYIFIFICHY
31. 3925-4011 MENIFLFRIFISDACNDYRTKKNAKNGND
32. 3962-4018 MLAMITEQKKMQRMAMTDF
33. 4183-4284 MRKSEIIVEFLTLSLFLFTSLFETYYKYPQCTVL
34. 4317-4361 MGWGFSCFYYLLLLF
35. 4295-4411 MSGLLEEDGVGFFLFLLFIIVILIIKFSLFSFQIKIKLY
36. 4708-4749 MSIFPISCSPSFYC
37. 4790-4822 MSFVIETIRLC
38. 4819-4926 MLKIINHNCNNYQSKICDLCQHLVHQNKHFILLFYL
39. 4875-4946 MPASCASKQTFYIVILLMTNIKSR
40. 4950-5006 MYSVRLCKRLQDILQCLER
41. 5025-5099 MFTLLTFPQVVPSTKEDILRKAGNL
42. 5127-5192 MNTMKTTIPGIQLSSKYLLINK
43. 4967-5203 MQALTGHFTMLREIVYPKTNVYSTYFPSGCSKHKRRYFEESWKSVTIDFPSSGNEYYEDNDSRYSAFFKISSNKQVKGE
44. 5207-5239 MMTDSSVLAVV
45. 5280-5399 MKLLLKYTCQCVEISHLCLCCSTCRLPSFAFWRVTPLERE
46. 5309-5491 MCGDFSLVFVLFNMSLTIICFLEGHSSRKGIMRTKTTGEKAGEAIFCVFCRQKQNPFWTQF
47. 5560-5613 MCSLCYEARLVAGQFSFS
48. 5645-5692 MKELSSARLLHDANKE
49. 5715-5783 MLPKTRPAQYIDSASISQCANLQ
50. 5768-5809 MCKSAIVTSQDLLC
51. 5945-5983 MIKCVALTKNNCI
52. 6017-6055 MFEVYHKSVSKCS
53. 6049-6138 MFLGQDGMLLNSVKITLMKGFQSYKVIFYI
54. 6248-6322 MFIIFYADSLLDKIITIKLIPNSSC
55. 6385-6441 MSVFPNILQPYLKPRTCAN
56. 6237-6446 MLVVCLLYFMQIHSSTKSSQSNLFQIQVVSRIVKLYSYCSLYRRKTKYCDVSFSQYPAALPKTQNLCKLN
57. 6576-6635 MWQENIDQCIKTSGLSYTAS
58. 6635-6679 MKMASKIYDQTYKYQ
59. 6657-6713 MIKLTNINNSTVEINCCCF
60. 6737-6802 MQHISLELLVMLKVLISCCCCF
61. 6859-6948 MKSQRARYLYTLLQDSGLIFREPDADSSFI
62. 6929-7009 MLIHHLFELFLLLYLLICIFLYCFNYC
63. 7078-7113 MHFCYCSNILIE
64. 7431-7466 MTARSTGRQFII
65. 7262-7624 MRAVVHRGVRFNFPFLQTLTNQSEIRVREDPDFQELAGLASEGEAEDFGSVFTFLPNDSKEHRTSVHHLVSRRFGKLVETRSFVDQQKTCITVRLRERGKQAKKRTMADCQMQEESLYTGE
66. 7668-7829 MTILLSYQLLLCGRRTWRLWRPSATWLLCSECFPLISLMQELKTREPLLTRPWW
67. 7742-7852 MAAVLGVLPSDFTYAGIKDKRAITYQAMVVKKISPER
68. 7877-7978 MISLIFVICFFYFIELFRDFCSVLAVYIVQNIHI
69. 8080-8115 MCMHMFTLHSPI
70. 8230-8274 MFLKIRWGWGLWDPK
71. 8314-8364 MHINTFVCQVAGERLRV
72. 8274-8465 MRVHIMVNFFTFVDAYKHICVSGCWRKAQSLRGGECRSLVSVLRLKLLSLEDCREITLNWSSET
73. 8475-8510 MGNMVLQSCHSL
74. 8378-8566 MQISRVRPAFEALKLGRLQGNHFELVIRDLKHHGKHGLAELPQLIEEAVENVKVNVCMFISIS
75. 8541-8591 MCVCSSAFHEEMYTQNY
76. 8566-8628 MKRCTHRTTKYYFLFSRTKAL
77. 8708-8743 MVIESFPLISYM
78. 8746-8925 MLRLLLETLCLSRRLQLSCSSPQRMMMTSKTKINAIFCTQVSAGISVTAKIVRVQPQMYI
79. 8968-9069 MLSNVLYKHIIGDFPIQADHCCFIYFSFSASKNG
80. 9354-9383 MPQRSSVLHR
81. 8978-9397 MCCTNILLGIFQYRLIIVASFISVSVHPRTANCSLCSGNAKESLALMPAYKARERLMLRALHRYGSGQEGCTRGWLSLPHSMRVFYLHSYCSRVWNQAAKYRLQKLGFKPVQGDLVWAEPVKGLKDATEELSAPQVRVLI
82. 9673-9768 MLNDCTFVLLFLVLICGFPFIFTCFLCCRSML
83. 9680-9778 MIVHLYYCFLFLFVVFHSFSLVFCAVDPCCDFR
84. 9825-9929 MSFIALYVCYSNSYPSVSYCASVVFHPGDSSYARK
85. 9963-10025 MVSRPIGSRRFGVLPIQSDSP
86. 9844-10206 MSATVTLTHQSLIVPLWFFIQVILPMPGNSVKYPENILGQWYQDRLAQDGLESCRFRVTPLKLNVPGCYRPLLAKPQNITYSLQTSSSDESNTHCLSLNFDLEASCYATVCLGEIMKTNLS
87. 10261-10356 MRSCIFNKKFIYNCHDDCVFYLTCNNIPLICL
88. 10304-10360 MMIVFFTLPATIFHSFVCE
89. 10390-10425 MSLSGPAQKQLD
90. 10428-10460 MNPKGSASCVQ
91. 10500-10571 MEILCCTSVKVYEANHELRNVNKS
92. 10622-10657 MSCLNSTMFVQI
93. 10627-10725 MFKFHNVCPNLMSSSIFQHKVIKSCSNPLLLIH
94. 10763-10795 MNERSFTCNDC
95. 10767-10826 MRGVSHATTADYKRQLWPSG
96. 10783-10842 MQRLLIIRGSCGLVVRDLDL
97. 10935-11075 MCVCYQTNKTKLHPKQLSDSIAQQEWDLNPGLKDSKLDVLIVELLKL
98. 11129-11182 MLFLKAAYKREVQNIGGI
99. 11841-11909 MGSNPADTIFFLSFLCKLRIMYH
100. 11885-11932 MQTQNNVSLNIQKNTS
101. 12046-12309 MRQKAGVNVKARMARLVTHVGCGQGYGESWVRNPARVCGVHQRQYLGRYNRTEGGAEGGNQKHKVKHGPDHKHTWGGKTTERQRQGPS

Variant Information


Variant PositionrsIDReferenceAlternate
13251204 rs179942138 A C

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: