Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001597

Transcript Name: si:dkey-207j16.2oa
Type: Overlapping
Genomic Location: chr4:9880653-9881325
Nearest Gene: si:dkey-207j16.2 (NM_001045067)


si:dkey-207j16.2oa
Exons
98806539881325




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 3.13 2.64 2.16 1.51 1.55 1.42 1.78 1.88 1.64 1.58 2.05 2.12 1.07 1.43 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 245-277 MMKMSSSFLHT
2. 295-453 MDICHLLNAIQDIMESVGTKAAIDLHNVFCSYYGCFCQNIFLCVQQRNSYRFG
3. 374-466 MFFVPTMAAFVRIFSFVFNKEIHTDLVEGEG
4. 466-513 MSFGVNYIFFKQAPSK
5. 521-670 MMPFDFFFPSGECVSNAFCFLVCTPAKSKCSVPFCSPSAAKKPIIELILQ

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: