Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001576

Transcript Name: lnc_mapk11
Type: lincRNA
Genomic Location: chr4:5326880-5328777
Nearest Gene: mapk11 (NM_001002095)


lnc_mapk11
Exons
53268805328777




Expression Information

Negligible Expression across RNA-Seq datasets





Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 310-363 MCVVFDQRFGFVTQIILV
2. 442-477 MLHKLVLELGAD
3. 414-635 MHIYKVNKLYVAQVSPGTRSGLILRPNSIETVHSLYHSACACLRVPDRRSVYCWRRIYISCQSLRRHTFAEELL
4. 701-748 MIIMLKQKIEDIYWDK
5. 953-985 MHLISVVCSLT
6. 985-1017 MKLIIRRRLIM
7. 1030-1095 MMDVSLSAPALRTESVDAASGK
8. 1079-1138 MQHLVNNLLMCCFVLLDVFW
9. 1128-1238 MSSGDGSTLISVHYAAHVVSLSSLMDSVQLMQLSETR
10. 1264-1308 MCRIWKYSFTCELKP
11. 1308-1388 MRKRKVVLHHILTDEALTLHSLPIMST
12. 1450-1491 MISEAERFPSGIMF
13. 1538-1609 MTVIRKNCSIYDCQSSQIELITVT
14. 1569-1640 MTVRAVRLSSLLSPDLQIINYCCR
15. 1808-1909 MLMCVCVRRTDTVRSMRSALGLIRILRQAESTNI
16. 1695-1952 MASNYYEKPLMEINGYSIIYIPLSSCPYLLLLKVRKTACLCACVCGAQTQSEACGLHLVSFAYCDRQRAQTSKVINVSALMFKQVS
17. 255-308 MCVVFDQRFGFVTQIILV
18. 387-422 MLHKLVLELGAD
19. 359-580 MHIYKVNKLYVAQVSPGTRSGLILRPNSIETVHSLYHSACACLRVPDRRSVYCWRRIYISCQSLRRHTFAEELL
20. 646-693 MIIMLKQKIEDIYWDK
21. 898-930 MHLISVVCSLT
22. 930-962 MKLIIRRRLIM
23. 975-1040 MMDVSLSAPALRTESVDAASGK
24. 1024-1083 MQHLVNNLLMCCFVLLDVFW
25. 1073-1183 MSSGDGSTLISVHYAAHVVSLSSLMDSVQLMQLSETR
26. 1209-1253 MCRIWKYSFTCELKP
27. 1253-1333 MRKRKVVLHHILTDEALTLHSLPIMST
28. 1395-1436 MISEAERFPSGIMF
29. 1483-1554 MTVIRKNCSIYDCQSSQIELITVT
30. 1514-1585 MTVRAVRLSSLLSPDLQIINYCCR
31. 1753-1854 MLMCVCVRRTDTVRSMRSALGLIRILRQAESTNI
32. 1640-1897 MASNYYEKPLMEINGYSIIYIPLSSCPYLLLLKVRKTACLCACVCGAQTQSEACGLHLVSFAYCDRQRAQTSKVINVSALMFKQVS

Variant Information


Variant PositionrsIDReferenceAlternate
5327222 rs40786057 C G
5327282 rs40707072 C A
5327285 rs41152121 A T
5327295 rs40915011 T G
5327296 rs41067417 A G
5327323 rs40913678 C A
5327395 rs41185418 C T

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: