Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001570

Transcript Name: mstx39
Type: lincRNA
Genomic Location: chr4:4837157-4839799
Nearest Gene: ndufa5 (NM_001013456)


mstx39
Exons
48371574839799




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0.03 0.22 0.48 0.75 0.69 1.08 0.46 0.46 0.62 0.53 -2.71 0 0.58 -2.73 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 4-132 MCSVAAGGVSLCVCQCVTPSSGALENCSSGSTRAAAAHRRLKL
2. 325-378 MCVVFDQRFGFVTQIILV
3. 429-512 MHIYKANKLYVAQVSPGVQRSNIQTEQH
4. 457-723 MLHKLVQEFRGVIFRPNNIDTVHSLYHSACLCLRVPDRRSVYNIDTVHSLYHSACLCLRVPDRRSVYCWRRIYISCQSLRRHTFAEELL
5. 789-827 MIIMLKQKKENIY
6. 1022-1054 MHLISVVCSLT
7. 1054-1086 MKLIIRRRLIM
8. 1099-1164 MMDVSLSDPALRTESVDAASGK
9. 1148-1207 MQHLVNNLLMCCFVLLDVFW
10. 1197-1307 MSSGDGSTLISVHYAAHVVSLSSLMDSVQLMQLSETC
11. 1304-1369 MLRISRREKPCAGSGNTALHVN
12. 1333-1377 MCRIWKYSFTCELKP
13. 1377-1457 MRKRKVVLHHILTDEALTLHSLPIMST
14. 1519-1560 MISEAERFPSGIMF
15. 1638-1709 MTVRAVRLSSLLSPHLQIINYCCR
16. 2065-2094 MSDDLMSADY
17. 2148-2198 MSDDYSCLMIIHVCHLN
18. 2165-2230 MSDDYSCLSSKLSLLIWSDRIS
19. 2240-2275 MLLPSGSSRRLF
20. 2330-2359 MLFNISAHLF
21. 2323-2421 MIDAFQYFSSFVLKISLNYIVDSSHQRPLVEKH
22. 2564-2641 MKDSEFNESVIQKQHHCILEICLTYV
23. 2637-2687 MFESRLLFTLLYFPSVL
24. 255-308 MCVVFDQRFGFVTQIILV
25. 359-442 MHIYKANKLYVAQVSPGVQRSNIQTEQH
26. 387-653 MLHKLVQEFRGVIFRPNNIDTVHSLYHSACLCLRVPDRRSVYNIDTVHSLYHSACLCLRVPDRRSVYCWRRIYISCQSLRRHTFAEELL
27. 719-757 MIIMLKQKKENIY
28. 952-984 MHLISVVCSLT
29. 984-1016 MKLIIRRRLIM
30. 1029-1094 MMDVSLSDPALRTESVDAASGK
31. 1078-1137 MQHLVNNLLMCCFVLLDVFW
32. 1127-1237 MSSGDGSTLISVHYAAHVVSLSSLMDSVQLMQLSETC
33. 1234-1299 MLRISRREKPCAGSGNTALHVN
34. 1263-1307 MCRIWKYSFTCELKP
35. 1307-1387 MRKRKVVLHHILTDEALTLHSLPIMST
36. 1449-1490 MISEAERFPSGIMF
37. 1568-1639 MTVRAVRLSSLLSPHLQIINYCCR
38. 1995-2024 MSDDLMSADY
39. 2078-2128 MSDDYSCLMIIHVCHLN
40. 2095-2160 MSDDYSCLSSKLSLLIWSDRIS
41. 2170-2205 MLLPSGSSRRLF
42. 2260-2289 MLFNISAHLF
43. 2253-2351 MIDAFQYFSSFVLKISLNYIVDSSHQRPLVEKH
44. 2494-2571 MKDSEFNESVIQKQHHCILEICLTYV
45. 2567-2617 MFESRLLFTLLYFPSVL
46. 250-303 MCVVFDQRFGFVTQIILV
47. 354-437 MHIYKANKLYVAQVSPGVQRSNIQTEQH
48. 382-648 MLHKLVQEFRGVIFRPNNIDTVHSLYHSACLCLRVPDRRSVYNIDTVHSLYHSACLCLRVPDRRSVYCWRRIYISCQSLRRHTFAEELL
49. 714-752 MIIMLKQKKENIY
50. 947-979 MHLISVVCSLT
51. 979-1011 MKLIIRRRLIM
52. 1024-1089 MMDVSLSDPALRTESVDAASGK
53. 1073-1132 MQHLVNNLLMCCFVLLDVFW
54. 1122-1232 MSSGDGSTLISVHYAAHVVSLSSLMDSVQLMQLSETC
55. 1229-1294 MLRISRREKPCAGSGNTALHVN
56. 1258-1302 MCRIWKYSFTCELKP
57. 1302-1382 MRKRKVVLHHILTDEALTLHSLPIMST
58. 1444-1485 MISEAERFPSGIMF
59. 1563-1634 MTVRAVRLSSLLSPHLQIINYCCR
60. 1990-2019 MSDDLMSADY
61. 2073-2123 MSDDYSCLMIIHVCHLN
62. 2090-2155 MSDDYSCLSSKLSLLIWSDRIS
63. 2165-2200 MLLPSGSSRRLF
64. 2255-2284 MLFNISAHLF
65. 2248-2346 MIDAFQYFSSFVLKISLNYIVDSSHQRPLVEKH
66. 2489-2566 MKDSEFNESVIQKQHHCILEICLTYV
67. 2562-2612 MFESRLLFTLLYFPSVL

Variant Information


Variant PositionrsIDReferenceAlternate
4839448 rs41177758 A G

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: