Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001567

Transcript Name: lnc_slc13a4
Type: lincRNA
Genomic Location: chr4:4706052-4708055
Nearest Gene: slc13a4 (NM_001089551)


lnc_slc13a4
Exons
47060524708055




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 1.77 1.65 1.59 1.76 1.4 2.15 1.59 2.21 1.4 1.84 2.56 2.44 1.89 1.94 2.24



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 45-83 MQCKLFFTTVFTF
2. 50-100 MQIILYYSFHFLISAFF
3. 130-168 MSLKVFIKALLSQ
4. 243-281 MHVIVQKLQHAAL
5. 425-457 MFWRSLFAGTL
6. 421-465 MHVLALFVCRNSLIG
7. 342-500 MRFKFITKFTYNLRPYRCALKGRARLNACFGALCLQELSDWVIFLHTACGISA
8. 485-619 MWYFCMNFITKRNCFFFVVVFLFACKQSGIFTTLHLMTGLSLTVY
9. 626-682 MLQYFSPRTCLVVFVTMFL
10. 796-831 MFTQHWNDVVRQ
11. 765-902 MERCLRTIPNYVYTALERRCQAMTVKSRRYTAADTPINIVCDTVQH
12. 958-999 MVHLKYNLNNTRYN
13. 1082-1159 MINTRYNYCFYITMMVRIGADVNKIQ
14. 1220-1366 MTAAAIKFIQQTGVVTFMFLASELLNMVLWTDPLGRTVGFKLSLVFLAG
15. 1529-1582 MNMRIYYQLTHCSVIIFL
16. 1705-1794 MLKYTESQGRPKHVGRNATTRRLLMTQAIA
17. 1869-1901 MSKSGVPKLCL

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: